This repository comprises Jupyter notebooks and files to reproduce the analysis in the article:
Jacobo de la Cuesta-Zuluaga, Scott T Kelley, Yingfeng Chen, Juan S Escobar, Noel T Mueller, Ruth E Ley, Daniel McDonald, Shi Huang, Austin D Swafford, Rob Knight, Varykina Thackray. Age and sex-dependent patterns of gut microbial diversity in human adults. bioRxiv 544270; doi: https://doi.org/10.1101/544270
These notebooks provide a detailed account of the methods (ie. code) used for the analyses in the publication.
The data and notebooks of each population are saved in their own folder