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itismeangie/README.md

Angelina Yershova

Computational biologist · Bioinformatics scientist · PhD candidate at DKFZ/KiTZ

I combine multi-omics analysis in R and Python with experimental validation to investigate cancer vulnerabilities. My work connects patient-cohort data, biological interpretation and target-discovery hypotheses, with a focus on Ewing sarcoma.

I expect to complete my PhD in October 2026 and am exploring computational biology, bioinformatics and biomedical data-science roles in Germany.

LinkedIn · ORCID

Selected project

Public analysis code from my first-author doctoral project investigating chromosome 1q gain and SF3B4-associated vulnerability.

  • Biological question: connect a recurrent copy-number alteration to clinical associations, molecular changes and candidate vulnerabilities.
  • Methods represented: copy-number and survival analysis, differential expression, pathway enrichment, network-based driver prioritization and proteomics.
  • Explore the code: topic-organized R/Python workflows, documented data-access boundaries and a small offline synthetic demo.

This is collaborative research. The repository documents manuscript authorship, and controlled patient-level and raw experimental data are not distributed publicly.

What I work with

  • Analysis: bulk and single-cell RNA-seq, copy-number alterations, survival analysis, pathway enrichment and multi-omics integration.
  • Tools: R/Bioconductor, Python, Linux/shell and Git.
  • Research: cancer genomics, biomarkers, target discovery and translating computational hypotheses into experimental follow-up.
  • Experimental perspective: inducible perturbation models, flow cytometry/FACS and molecular assays.

Selected publication

Co-author of High 4E-BP1 expression associates with chromosome 8 gain and CDK4/6 sensitivity in Ewing sarcoma, published in the Journal of Clinical Investigation. This is a separate study from the SF3B4 project above.

Connect

Based in Darmstadt, Germany; interested in opportunities in the Frankfurt Rhine-Main/Heidelberg region and remote roles in Germany. The best place to reach me is LinkedIn.

Pinned Loading

  1. SF3B4-as-1q-gain-driver SF3B4-as-1q-gain-driver Public

    R and Python workflows for Ewing sarcoma cancer genomics: 1q gain, survival, transcriptomics and driver prioritization. Includes an offline synthetic demo.

    R