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Drift workflow: run corrections --strict (#94) #95

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iskandr merged 2 commits into from
Sep 28, 2026
Merged

Drift workflow: run corrections --strict (#94) #95

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Drift workflow: run corrections --strict, the renamed curation comman…
iskandr Sep 28, 2026
817a738
testing.md: the drift workflow's two checks run separately
iskandr Sep 28, 2026
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4 changes: 2 additions & 2 deletions .github/workflows/drift.yml
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Original file line number Diff line number Diff line change
@@ -1,5 +1,5 @@
name: drift
# Weekly check that the live osteosarc.com sources still match the curation
# Weekly check that the live osteosarc.com sources still match the corrections
# (osteosarc/curation.py) and that every documented example still runs.
on:
schedule:
Expand All @@ -16,7 +16,7 @@ jobs:
python-version: '3.12'
- run: python -m pip install -e .
- run: osteosarc --cache "$RUNNER_TEMP/cache" sync
- run: osteosarc --cache "$RUNNER_TEMP/cache" curation --strict
- run: osteosarc --cache "$RUNNER_TEMP/cache" corrections --strict

examples:
runs-on: ubuntu-latest
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2 changes: 1 addition & 1 deletion docs/testing.md
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Expand Up @@ -39,7 +39,7 @@ Ensembl 95 annotation. On an empty cache, check the README first so that a snaps
exists.

A weekly drift workflow checks that every correction still matches the live website,
then runs all the examples.
and, separately, runs all the examples.

## Repeat the live read check

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