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Process stalled when running make_prg on a set of fasta file

Status: Open.

#70 In iqbal-lab-org/make_prg;

· mthang opened on Jun 26, 2025

Ignore Ns that might have slipped through when updating PRGs

Status: Open.

#58 In iqbal-lab-org/make_prg;

· leoisl opened on Jun 7, 2023

segfaulting when building from_msa

Status: Open.

#57 In iqbal-lab-org/make_prg;

· iqbal-lab opened on May 28, 2023

Strange difference in overlapping positions between make_prg versions

Status: Open.

#55 In iqbal-lab-org/make_prg;

· mbhall88 opened on Dec 13, 2022

Add --update-method to make_prg update

Status: Open.

#51 In iqbal-lab-org/make_prg;

· leoisl opened on Nov 30, 2022

Copy-on-write might not be efficient in python

Status: Open.

#47 In iqbal-lab-org/make_prg;

· leoisl opened on Nov 29, 2022

Accept multiple suffixes for option -s / --suffix

Status: Open.

#39 In iqbal-lab-org/make_prg;

· leoisl opened on Nov 22, 2022

Indels can cause spurious site production

bugSomething isn't workingSomething isn't working

Status: Open.

#27 In iqbal-lab-org/make_prg;

· bricoletc opened on Oct 5, 2021

GFA format and ML path format

Status: Open.

#23 In iqbal-lab-org/make_prg;

· bricoletc opened on Mar 5, 2021

Stop producing empty alleles

Status: Open.

#17 In iqbal-lab-org/make_prg;

· bricoletc opened on Aug 11, 2020

Ambiguous path production

Status: Open.

#15 In iqbal-lab-org/make_prg;

· bricoletc opened on Jun 14, 2020