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@immunomind

ImmunoMind

The modern machine learning and data engineering stack for immunomics-driven development of personalized immunotherapies and vaccines. Open-source forever.
README.md

🐦‍🔥 immunomind – personalize therapies using immunomics.

The modern machine learning and data engineering stack for immunomics-driven development of personalized immunotherapies and vaccines

Tutorials | API reference | GitHub | Publication (coming soon...)

📦 Installation

Get set up fast and verify your environment.
Start here →

⚡ Quick start

Run your first analysis in 5 minutes.
Run it here →

🎓 Tutorials

Hands-on, end-to-end guides from zero to plots.
Explore →

🛠️ How-tos

Task-oriented recipes for common jobs.
Under construction

🧬 API — immunarch

Multi-modal immune repertoire analytics.
API reference →

🦋 API — immundata

Unified layer for immune repertoire data.
API reference →

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  1. immunarch immunarch Public

    🧬 immunarch [R package] – Multi-Modal Immune Repertoire Analytics for Immunotherapy and Vaccine Design

    R 338 70

  2. immundata immundata Public

    🦋 immundata [R package] – A Unified Data Layer for Large-Scale Single-Cell, Spatial and Bulk Immunomics

    R 2

Repositories

Showing 10 of 18 repositories
  • skills Public

    Public repository for immune repertoire analysis Agent Skills.

    immunomind/skills’s past year of commit activity
    0 MIT 0 0 0 Updated Feb 10, 2026
  • immundata Public

    🦋 immundata [R package] – A Unified Data Layer for Large-Scale Single-Cell, Spatial and Bulk Immunomics

    immunomind/immundata’s past year of commit activity
    R 2 0 0 0 Updated Dec 16, 2025
  • immunarch Public

    🧬 immunarch [R package] – Multi-Modal Immune Repertoire Analytics for Immunotherapy and Vaccine Design

    immunomind/immunarch’s past year of commit activity
    R 338 Apache-2.0 70 11 1 Updated Nov 18, 2025
  • docs Public

    🐦‍🔥 Documentation for ImmunoMind tools

    immunomind/docs’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Oct 31, 2025
  • .github Public
    immunomind/.github’s past year of commit activity
    0 0 0 0 Updated Oct 30, 2025
  • immunomind.github.io Public
    immunomind/immunomind.github.io’s past year of commit activity
    HTML 0 0 0 0 Updated Oct 11, 2025
  • airr-gpt Public

    🤖 AIRR-GPT is your intelligent guide for working with bulk and single-cell Adaptive Immune Receptor Repertoire (AIRR) data using immunarch and immundata R packages

    immunomind/airr-gpt’s past year of commit activity
    1 MIT 0 0 0 Updated Apr 23, 2025
  • rpy2 Public Forked from rpy2/rpy2

    Interface to use R from Python

    immunomind/rpy2’s past year of commit activity
    Python 0 GPL-2.0 86 0 0 Updated Jan 20, 2023
  • external-packages Public

    Dedicated place for pre-build packages

    immunomind/external-packages’s past year of commit activity
    Dockerfile 0 0 0 0 Updated Dec 6, 2022
  • zipfly Public Forked from djbios/zipfly

    Writing large ZIP archives without memory inflation

    immunomind/zipfly’s past year of commit activity
    Python 0 MIT 26 0 0 Updated Oct 20, 2022
View all repositories

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