Recording/displaying metadata with EMMA#2
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…totype functions/placeholders/docs
NajlaAbassi
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federicomarini
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federicomarini
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Well well well done!
See my few comments, I think we are very ready to go!
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wouldn't it be better to name this directly "gene_universe" or so to make it unambiguous/self explanatory?
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yes indeed! I'm renaming it now f5e8873
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| #' EMMA_get_record | |||
| #' | |||
| #' @param res Functional Enrichment Analysis results (enrichResult, gseaResult ...) | |||
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especially for the reason of the "I want to know the packages and functions supported": Can we add a @Seealso (i think that is the tag) for linking to some other content on that line?
…hen we expand the pkg
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All good for me, I think! |
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I would say let's wrap it and let's submit! |
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EMMA_run()to capture info in a robust manner for:clusterPro(5),gprofiler,mosdef(will expand later)EMMA_show()to print a user friendly summary of the recorded metadataEMMA_get_record()to fetch the corresponding attribute "EMMA_record"EMMA_explain()to return human readable text with info recorded withEMMA_run()+ pkg citationsEMMA_freeze()EMMA_add_custom_metadata()to allow users to manually provide additional information