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@ikmb

Institute of Clinical Molecular Biology

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  1. MAGScoT MAGScoT Public

    MAGScoT - a MAG scoring and refinement tool

    R 42 2

  2. eagleimp eagleimp Public

    C++ 27 4

  3. amino_acid_encoding_deep_learning_applications amino_acid_encoding_deep_learning_applications Public

    The repository contains all the code for the paper amino acid encoding using deep learning application

    Python 20 5

  4. vcf2prot vcf2prot Public

    Accelerate the generation of personalized proteomes from a Variant calling format (VCF) file and a reference proteome using graphical processing units (GPUs).

    Rust 20 2

  5. TOFU-MAaPO TOFU-MAaPO Public

    Nextflow pipeline for the analysis of metagenomic short reads.

    Nextflow 13 6

  6. gwas-assoc gwas-assoc Public

    The IKMB GWAS Association Testing Pipeline

    Python 9 2

Repositories

Showing 10 of 74 repositories
  • PSC-scDRS Public
    ikmb/PSC-scDRS’s past year of commit activity
    JavaScript 0 1 0 0 Updated Jan 14, 2026
  • bloodAGENT Public
    ikmb/bloodAGENT’s past year of commit activity
    C++ 4 BSD-2-Clause 0 0 0 Updated Jan 14, 2026
  • ngs-qc Public

    QC tools for new sequencing runs (FastQC, FastQ Screen, MultiQC Report)

    ikmb/ngs-qc’s past year of commit activity
    Nextflow 0 GPL-3.0 1 0 0 Updated Jan 14, 2026
  • eagleimp Public
    ikmb/eagleimp’s past year of commit activity
    C++ 27 GPL-3.0 4 1 0 Updated Jan 9, 2026
  • EagleImp-RAP Public

    Eagleimp app for the UKB RAP (dnanexus)

    ikmb/EagleImp-RAP’s past year of commit activity
    Shell 0 GPL-3.0 0 0 0 Updated Jan 7, 2026
  • checkphase Public
    ikmb/checkphase’s past year of commit activity
    C++ 0 GPL-3.0 0 1 0 Updated Dec 2, 2025
  • TOFU-MAaPO Public

    Nextflow pipeline for the analysis of metagenomic short reads.

    ikmb/TOFU-MAaPO’s past year of commit activity
    Nextflow 13 GPL-3.0 6 0 1 Updated Oct 17, 2025
  • catch-all Public

    Data management resources for the clinical research unit catch-all.

    ikmb/catch-all’s past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated Oct 1, 2025
  • phewas-assoc Public

    The IKMB Association Testing Pipeline for PheWAS

    ikmb/phewas-assoc’s past year of commit activity
    Python 1 GPL-3.0 0 0 0 Updated Sep 12, 2025
  • CDR3_QTL Public

    Scripts supporting CDR3-QTL analysis in IBD

    ikmb/CDR3_QTL’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Sep 1, 2025

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