Dev matlab example#173
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…litate switching datasets during demos
* Fix pyvista off-screen rendering for headless screenshot mode in image_recon_multi_view * Add AAL3 and Brodmann atlas notebooks * consolidating custom parcel label notebooks * extend explanations in 52c_custom_parcel_labels.ipynb * added documentation and renamed 52c custom_parcel_labels * Fix aal3 repeated table Update 52_custom_parcel_labels.ipynb so the final ICBM152 summary table reports Brodmann labels instead of repeating the AAL3 summary. * Minor changes on the combined file Deleted the original notebooks: - examples/head_models/52a_aal3_labels_colin27_and_icbm152.ipynb - examples/head_models/52b_brodmann_labels_icbm152_and_colin27.ipynb Updated Eike's combined notebook by: - Renaming it from 52_custom_parcel_labels.ipynb to 52_mni_atlas_labels_aal3_brodmann.ipynb so AAL3 and Brodmann are easier to find for users - Updating the notebook heading to clearly mention AAL3 and Brodmann atlas labels - Adding a short opening sentence explaining that the notebook labels Colin27 and ICBM152 surfaces and summarizes overlap with Schaefer2018 parcels - Added an optional SAVE_TABLES example that writes the four parcel summary tables to TSV files * render 52_mni_atlas_labels_aal3_brodmann.ipynb in the docs --------- Co-authored-by: Eike Middell <eike@middell.net> Co-authored-by: Alexander von Lühmann <avonluh@gmail.com>
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Hi Eike,
This pull request adds an example notebook demonstrating how to use the matlab engine together with Cedalion.
Changes:
Please let me know if you would like me to make any changes to the example notebook :)