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changing the transform protocol corrupts hash and re-stage & run fails

Status: Open.

Bug

#39 In hallamlab/Metasmith;

· Tony-xy-Liu opened on Aug 6, 2025

Update DAG diagram to lab theme

Status: Open.

Task

#35 In hallamlab/Metasmith;

· Tony-xy-Liu opened on Jul 22, 2025

Kofamscan timeout despite output produced

Status: Open.

Bug

#34 In hallamlab/Metasmith;

· Tony-xy-Liu opened on Jul 22, 2025

FAST module

new workflowdescribes integration of new analysis workflow into the metasmith standard librarydescribes integration of new analysis workflow into the metasmith standard library

out of scopeTask would require significant deviation from MetasmithTask would require significant deviation from Metasmith

Status: Open.

Feature

#33 In hallamlab/Metasmith;

· Tony-xy-Liu opened on Jul 22, 2025

TreeSAPP module

new workflowdescribes integration of new analysis workflow into the metasmith standard librarydescribes integration of new analysis workflow into the metasmith standard library

Status: Open.

Feature

#31 In hallamlab/Metasmith;

· Tony-xy-Liu opened on Jul 15, 2025

Binning module

new workflowdescribes integration of new analysis workflow into the metasmith standard librarydescribes integration of new analysis workflow into the metasmith standard library

Status: Open.

Feature

#30 In hallamlab/Metasmith;

· Tony-xy-Liu opened on Jul 15, 2025

Assembly QC stats (genome_QC) module

new workflowdescribes integration of new analysis workflow into the metasmith standard librarydescribes integration of new analysis workflow into the metasmith standard library

Status: Open.

Feature

#29 In hallamlab/Metasmith;

· Tony-xy-Liu opened on Jul 15, 2025

Windows compatibility

Status: Open.

Feature

#28 In hallamlab/Metasmith;

· Tony-xy-Liu opened on Jul 15, 2025

Mac compatibility

Status: Open.

Feature

#27 In hallamlab/Metasmith;

· Tony-xy-Liu opened on Jul 15, 2025

Explicit step for pulling container image

Status: Open.

Feature

#26 In hallamlab/Metasmith;

· Tony-xy-Liu opened on Jul 15, 2025

Metapathways module

new workflowdescribes integration of new analysis workflow into the metasmith standard librarydescribes integration of new analysis workflow into the metasmith standard library

Status: Open.

Feature

#23 In hallamlab/Metasmith;

· Tony-xy-Liu opened on Jul 15, 2025