This repository provides the data processing pipeline and analysis codes used in:

Fujii K, Zhulyn O, Byeon GW, Kerr C, Genuth N, Walsh E, Barna M. Controlling tissue patterning by translational regulation of signaling transcripts through the core translation factor eIF3c.

Description

• Raw sequencing data files are available in GEO: GSE183472
• alignment directory contains pipeline scripts needed to generate count tables for eCLIP and Ribo-seq experiments in the paper.
• analysis directory contains R script that reproduces analysis and plots in the paper.