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Fix issue in the Transcript Pass logic that would cause pVACview to crash on retiering - #1459

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Fix issue in the Transcript Pass logic that would cause pVACview to crash on retiering#1459
susannasiebert wants to merge 1 commit into
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pvacview

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@susannasiebert

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Using apply(df$mainTable, TRUE ... instead of apply(df$mainTable, 1 ... when calculating transcript_pass status would cause pVACview to crash during re-tiering. This PR fixes that. It also centralizes the logic for this status by re-using the existing is_transcript_pass function. Additionally, the exiting logic to add a new column for the results of this function during retiering would result in a second Transcript Pass column to be appended instead of the existing column to be updated. This PR fixes that.

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+1 🏗️

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