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Fix command mentions of the allele_specific_cutoffs command - #1458

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Fix command mentions of the allele_specific_cutoffs command#1458
susannasiebert wants to merge 1 commit into
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allele_specific_cutoffs

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@susannasiebert

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In various places we were still referencing the previous command line tree of the allele_specific_cutoffs command (pvacseq|fuse|splice|bind allele_specific_cutoffs instead of pvactools allele_specific_cutoffs). This PR fixes that.

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susannasiebert requested a review from tmooney August 31, 2026 15:53

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How about this one?

help="Use allele-specific binding thresholds when evaluating the binding criteria for tiering. To print the allele-specific binding thresholds run `%s allele_specific_cutoffs`. " % tool

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susannasiebert force-pushed the allele_specific_cutoffs branch from af8487d to bf25b51 Compare August 31, 2026 16:09
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How about this one?

help="Use allele-specific binding thresholds when evaluating the binding criteria for tiering. To print the allele-specific binding thresholds run `%s allele_specific_cutoffs`. " % tool

Good catch. Fixed.

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+1 📟

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2 participants