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Update SOFIMA readme with citation info and LICONN notebook reference. #109

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Update SOFIMA readme with citation info and LICONN notebook reference. #109

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27 changes: 27 additions & 0 deletions CITATION.cff
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authors:
- affiliation: Google (Switzerland)
family-names: Januszewski
given-names: "Micha\u0142"
orcid: 0000-0002-3480-2744
- affiliation: Google (United States)
family-names: Blakely
given-names: Tim
orcid: 0000-0003-0995-5471
- affiliation: Google (Switzerland)
family-names: Lueckmann
given-names: Jan-Matthis
orcid: 0000-0003-4320-4663
cff-version: 1.2.0
date-released: '2024-01-19'
doi: 10.5281/zenodo.10534541
keywords:
- stitching
- microscopy
- montaging
- alignment
license:
- apache-2.0
message: If you use this software, please cite it using the metadata from this file.
title: 'SOFIMA: Scalable Optical Flow-based Image Montaging and Alignment'
type: software
url: "https://github.com/google-research/sofima"
10 changes: 10 additions & 0 deletions README.md
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Expand Up @@ -4,6 +4,9 @@ SOFIMA (Scalable Optical Flow-based Image Montaging and Alignment) is a tool
for stitching, aligning and warping large 2d, 3d and 4d microscopy datasets.

[![License](https://img.shields.io/badge/License-Apache%202.0-blue.svg)](https://opensource.org/licenses/Apache-2.0)
[![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.10534541.svg)](https://zenodo.org/records/10534541)

Please cite as https://zenodo.org/records/10534541

This is not an officially supported Google product.

Expand Down Expand Up @@ -32,6 +35,13 @@ and the mesh node positions.

* [electron microscopy tile stitching](https://colab.research.google.com/github/google-research/sofima/blob/main/notebooks/em_stitching.ipynb)
* [electron microscopy section alignment](https://colab.research.google.com/github/google-research/sofima/blob/main/notebooks/em_alignment.ipynb)
* [LICONN 3d tile stitching](https://colab.research.google.com/github/google-research/sofima/blob/main/notebooks/liconn_inplane_stitching.ipynb)

# Citation

If you use this software in your research, please cite it using the following metadata:

> Januszewski, M., Blakely, T., & Lueckmann, J.-M. (2024). SOFIMA: Scalable Optical Flow-based Image Montaging and Alignment. Zenodo. https://doi.org/10.5281/zenodo.10534541

# License

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