Issues

• use prothint_augustus.gff as hints in Augustus

  gatech-genemark/ProtHint#63 · Filter by author MFSeidl opened on Mar 11, 2026
  2

• Hash-merge error after installing all dependencies

  gatech-genemark/ProtHint#62 · Filter by author desmodus1984 opened on Jul 17, 2025

• The hints file(s) for GeneMark-EX contain less than 150 introns with multiplicity >= 4!

  gatech-genemark/ProtHint#60 · Filter by author yzliu01 opened on Jun 23, 2024
  2

• genemark_hintsfile.gff.rnaseq.tmp': No such file or directory, ERROR Failed to execute: mv

  gatech-genemark/ProtHint#56 · Filter by author scaliwalker opened on Aug 29, 2023
  1

• Freeze at 99,9%

  gatech-genemark/ProtHint#55 · Filter by author tberthelier opened on Jul 14, 2023
  4

• Error: file not found

  gatech-genemark/ProtHint#53 · Filter by author kdarragh1994 opened on Feb 2, 2023
  6

• petap.pl fails on one sample but not others, too few introns

  gatech-genemark/ProtHint#50 · Filter by author ToriEggers opened on Oct 31, 2022
  3

• alternative start codons

  gatech-genemark/ProtHint#48 · Filter by author cpaight opened on Sep 16, 2022
  1

• Error: ProtHint/ACAB/prothint_augustus.gff not found !

  gatech-genemark/ProtHint#43 · Filter by author CongLiu37 opened on Jul 1, 2022
  1

• Error in braker (Prothint step)

  gatech-genemark/ProtHint#38 · Filter by author minhasbushra opened on Jan 26, 2022
  1

• error, file not found parse_set.pl: set.out

  gatech-genemark/ProtHint#35 · Filter by author mictadlo opened on Oct 19, 2021
  5

• No stop codons in spaln.gff

  gatech-genemark/ProtHint#13 · Filter by author cdmmoeller opened on Aug 16, 2020
  8

• Change error messages for failed alignments

  enhancement
  gatech-genemark/ProtHint#8 · Filter by author tomasbruna opened on Mar 15, 2020
  

• ProtHint license question

  gatech-genemark/ProtHint#6 · Filter by author npavlovikj opened on Feb 21, 2020
  12

• Option to redirect all output to file

  gatech-genemark/ProtHint#4 · Filter by author KatharinaHoff opened on Jan 30, 2020
  1