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Indexes for coreprofiler_allele_calling: add Salmonella cgMLST and synchronize all into CVMFS

Status: Open.

#87 In galaxyproject/idc;

· jennaj opened on Apr 22, 2026

Add mocked DB (226) for gtdb-tk to CVMFS

Status: Open.

#85 In galaxyproject/idc;

· paulzierep opened on Mar 27, 2026

Data Documentation -- discussion

discussionLet's discuss and planLet's discuss and plan

Status: Open.

#84 In galaxyproject/idc;

· jennaj opened on Feb 24, 2026

UCSC genomes to use for auto runs (linked back to forum)

Status: Open.

#83 In galaxyproject/idc;

· jennaj opened on Feb 17, 2026

Update Kraken2 + Braken indexes for July 2025 and October 2025 updates

Status: Open.

#82 In galaxyproject/idc;

· jennaj opened on Feb 3, 2026

Add mpa_vJan21_TOY_CHOCOPhlAnSGB_202103 MetaPhlan database

Status: Open.

#81 In galaxyproject/idc;

· bebatut opened on Jan 23, 2026

Request: Update Dada2 indexes, including Silva

Status: Open.

#80 In galaxyproject/idc;

· jennaj opened on Jan 23, 2026

Request for Kraken2 index update to 10/15/2025 releases (core_nt, others)

enhancementNew feature or requestNew feature or request

Status: Open.

#78 In galaxyproject/idc;

· jennaj opened on Dec 10, 2025

Add Sylph, DeepARG and Groot DB

Status: Open.

#77 In galaxyproject/idc;

· hugolefeuvre opened on Nov 3, 2025

Request: index UniRef90 for Diamond at the UseGalaxy servers

Status: Open.

#76 In galaxyproject/idc;

· jennaj opened on Oct 28, 2025

Update the ABRicate databases

Status: Open.

#74 In galaxyproject/idc;

· joao-biologia opened on Oct 12, 2025

Update InterProScan index

Status: Open.

#73 In galaxyproject/idc;

· jennaj opened on Oct 8, 2025