Naming scheme

Most files come with 3 file extensions

• file_name.py (python)
• file_name_submit.sh (bash)
• file_name_figure_x.ipynb (jupyter)

The bash script just calls the python file to submit it on a cluster using cbsub (LSF).

After a sucesful run, the jupyter file can be executed to show too corrisponding figure.

Data generation (20 GB)

The script do depend on each other, and thus, execuion order is important.

1. run create_correlation_integral_submit.sh
2. run create_histogram_submit.sh
3. run create_refrence_values_submit.sh
4. run mcmc_submit.sh
5. run shrink_and_inflate_submit.sh
6. run sweep_theta_1d_submit.sh
7. run measure_vs_spectral_radius_submit.sh

Finally, you reproduced all the files in data and results! :)

Create Figures without Data

After data generation, you can just run the .ipynb file in jupyter lab with the corresponding paper name.