Feat/new fdb rs bindings#86
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* fix structural hash * WIP: add algo for node union * WIP: implement union * WIP: node union method * WIP: overall union method * WIP: fix tests * WIP: add hash computation when we start merging * WIP: add hash computation with children coordinates * WIP: add hash computation test for semi-similar qubes * WIP: new try merge function * WIP: second implementation of node_union * WIP: start internal_set_op * WIP: implement internal_set_operations * WIP: fix recursion of the union operation * WIP: add children to intermediate intersection nodes * WIP: working merge but with duplicates still * fix bug wrong values appended * start implementing merge * clean up a bit * WIP: add merging of coords * finish compression * add compression test * semi-working compression * fixed compression * fix compression test * fix compression to remove duplicates as well, and fix union to remove duplicates * clean up * add CI and QA * add QA format * ignore test scripts * clean up * format rust code * harmonise structural hashes in Qube and NodeRef * add pre-commit * clean up * fix build * start implementing cads rust adaptor with merge * implement append_datacube * compile * add tests * try cds constraints reading * failing union example * WIP: fix union to merge branches only in other well, but duplicates remain * WIP: see if node already exists when creating a new one * WIP: try to remove the same node idx, which seems to have duplicates in the qube * fix merge/union * WIP: try to fix merging of different dimension orders * change when CI is run * fix union * fix bug and make dss eg work * change when to run CI * implement union many * cads rust adaptor * to datacubes method (#64) * remove mars list file * try to separate floats from general coords * separate float from coords * clean up * add all_unique_dim_coords method and tests * clean up * doc code * doc code * rename funcs according to review * clear other qube in union * add test for mars_list * fix tests * fix mod test mars list adapter
* fix structural hash * WIP: add algo for node union * WIP: implement union * WIP: node union method * WIP: overall union method * WIP: fix tests * WIP: add hash computation when we start merging * WIP: add hash computation with children coordinates * WIP: add hash computation test for semi-similar qubes * WIP: new try merge function * WIP: second implementation of node_union * WIP: start internal_set_op * WIP: implement internal_set_operations * WIP: fix recursion of the union operation * WIP: add children to intermediate intersection nodes * WIP: working merge but with duplicates still * fix bug wrong values appended * start implementing merge * clean up a bit * WIP: add merging of coords * finish compression * add compression test * semi-working compression * fixed compression * fix compression test * fix compression to remove duplicates as well, and fix union to remove duplicates * clean up * add CI and QA * add QA format * ignore test scripts * clean up * format rust code * harmonise structural hashes in Qube and NodeRef * add pre-commit * clean up * fix build * start implementing cads rust adaptor with merge * implement append_datacube * compile * add tests * try cds constraints reading * failing union example * WIP: fix union to merge branches only in other well, but duplicates remain * WIP: see if node already exists when creating a new one * WIP: try to remove the same node idx, which seems to have duplicates in the qube * fix merge/union * WIP: try to fix merging of different dimension orders * change when CI is run * fix union * fix bug and make dss eg work * change when to run CI * implement union many * cads rust adaptor * to datacubes method (#64) * remove mars list file * try to separate floats from general coords * separate float from coords * clean up * add all_unique_dim_coords method and tests * clean up * doc code * doc code * start building python interface * add to and from ascii methods * add python bindings to qubed-meteo * WIP: python interface to mars_list adapter * WIP: python interface to mars_list adapter * fix python interface between rust modules * bindings for to_datacubes * refactor: separate rust crates from python wrapper crates * chore: clean rust warnings in core and meteo adapter * test: move python binding tests into wrapper crates * ci: unify checks and wheel builds with rust cache * ci: remove --locked from workspace test step * chore: remove legacy embedded python modules and stale ignore paths * ci: run python binding tests and optimize PyQube __len__ * fix: make union_many validate input types before mutating * clean up * fix tests --------- Co-authored-by: mathleur <mathilde.leuridan@ecmwf.int> Co-authored-by: Mathilde Leuridan <90444327+mathleur@users.noreply.github.com>
* fix structural hash * WIP: add algo for node union * WIP: implement union * WIP: node union method * WIP: overall union method * WIP: fix tests * WIP: add hash computation when we start merging * WIP: add hash computation with children coordinates * WIP: add hash computation test for semi-similar qubes * WIP: new try merge function * WIP: second implementation of node_union * WIP: start internal_set_op * WIP: implement internal_set_operations * WIP: fix recursion of the union operation * WIP: add children to intermediate intersection nodes * WIP: working merge but with duplicates still * fix bug wrong values appended * start implementing merge * clean up a bit * WIP: add merging of coords * finish compression * add compression test * semi-working compression * fixed compression * fix compression test * fix compression to remove duplicates as well, and fix union to remove duplicates * clean up * add CI and QA * add QA format * ignore test scripts * clean up * format rust code * harmonise structural hashes in Qube and NodeRef * add pre-commit * clean up * fix build * start implementing cads rust adaptor with merge * implement append_datacube * compile * add tests * try cds constraints reading * failing union example * WIP: fix union to merge branches only in other well, but duplicates remain * WIP: see if node already exists when creating a new one * WIP: try to remove the same node idx, which seems to have duplicates in the qube * fix merge/union * WIP: try to fix merging of different dimension orders * change when CI is run * fix union * fix bug and make dss eg work * change when to run CI * implement union many * cads rust adaptor * to datacubes method (#64) * remove mars list file * try to separate floats from general coords * separate float from coords * clean up * add all_unique_dim_coords method and tests * clean up * doc code * doc code * rename funcs according to review * clear other qube in union * add test for mars_list * fix tests * fix mod test mars list adapter * add to_dss_constraints encoder * add arena json serde * add fdb adapter * just parse all coords as string for now in fdb adapter * merge python interface branch * add python bindings for new serde and fdb adapter * fix CI * add docs * keep leading 0 when parsing strings * try rsfdb from github * try path * add fdb list adapter eg * add more complete docs * remove old docs * TODOs * TODOs * get_or_create_child method * keep native types in json serialisation * update fdb adapter to go from a json map * Stop tracking generated mdBook output; add to .gitignore * add docs action * patch rsfdb * patch rsfdb * run tests locally
* add basic fdb reader * float coordinates * add datetime coord * fix fdb reader on db * add coord types to json serde * fix when empty child * add qube examples * fix qa * add version to json * ignore files * rename vars Co-authored-by: Copilot Autofix powered by AI <175728472+Copilot@users.noreply.github.com> * Potential fix for pull request finding Co-authored-by: Copilot Autofix powered by AI <175728472+Copilot@users.noreply.github.com> * Potential fix for pull request finding Co-authored-by: Copilot Autofix powered by AI <175728472+Copilot@users.noreply.github.com> * Potential fix for pull request finding Co-authored-by: Copilot Autofix powered by AI <175728472+Copilot@users.noreply.github.com> * Potential fix for pull request finding Co-authored-by: Copilot Autofix powered by AI <175728472+Copilot@users.noreply.github.com> * Potential fix for pull request finding Co-authored-by: Copilot Autofix powered by AI <175728472+Copilot@users.noreply.github.com> * Potential fix for pull request finding Co-authored-by: Copilot Autofix powered by AI <175728472+Copilot@users.noreply.github.com> * Potential fix for pull request finding Co-authored-by: Copilot Autofix powered by AI <175728472+Copilot@users.noreply.github.com> * Change datetime format to ISO-like without timezone * format * fix compile errors * Potential fix for pull request finding Co-authored-by: Copilot Autofix powered by AI <175728472+Copilot@users.noreply.github.com> * Potential fix for pull request finding Co-authored-by: Copilot Autofix powered by AI <175728472+Copilot@users.noreply.github.com> * Potential fix for pull request finding Co-authored-by: Copilot Autofix powered by AI <175728472+Copilot@users.noreply.github.com> * Potential fix for pull request finding Co-authored-by: Copilot Autofix powered by AI <175728472+Copilot@users.noreply.github.com> * Potential fix for pull request finding Co-authored-by: Copilot Autofix powered by AI <175728472+Copilot@users.noreply.github.com> * add patch for private repos * test json version --------- Co-authored-by: Copilot Autofix powered by AI <175728472+Copilot@users.noreply.github.com>
* add python bindings * drop and squeeze * Potential fix for pull request finding Co-authored-by: Copilot Autofix powered by AI <175728472+Copilot@users.noreply.github.com> * Potential fix for pull request finding Co-authored-by: Copilot Autofix powered by AI <175728472+Copilot@users.noreply.github.com> * Potential fix for pull request finding Co-authored-by: Copilot Autofix powered by AI <175728472+Copilot@users.noreply.github.com> * Potential fix for pull request finding Co-authored-by: Copilot Autofix powered by AI <175728472+Copilot@users.noreply.github.com> * Potential fix for pull request finding Co-authored-by: Copilot Autofix powered by AI <175728472+Copilot@users.noreply.github.com> * select multiple vals * add python bindings for squeeze and drop * Potential fix for pull request finding Co-authored-by: Copilot Autofix powered by AI <175728472+Copilot@users.noreply.github.com> * Potential fix for pull request finding Co-authored-by: Copilot Autofix powered by AI <175728472+Copilot@users.noreply.github.com> * Potential fix for pull request finding Co-authored-by: Copilot Autofix powered by AI <175728472+Copilot@users.noreply.github.com> --------- Co-authored-by: Copilot Autofix powered by AI <175728472+Copilot@users.noreply.github.com>
* Add Python CI, update API docs, and fix Rust append behavior * Update qubed/src/merge.rs Co-authored-by: Copilot <175728472+Copilot@users.noreply.github.com> * Update qubed/tests/test_union.rs Co-authored-by: Copilot <175728472+Copilot@users.noreply.github.com> * cargo fmt --------- Co-authored-by: Copilot <175728472+Copilot@users.noreply.github.com>
* fix select * fix select * Update qubed/src/select.rs Co-authored-by: Copilot <175728472+Copilot@users.noreply.github.com> * Update qubed/src/select.rs Co-authored-by: Copilot <175728472+Copilot@users.noreply.github.com> * declare higher level python project (#83) * Improve error handling in node removal * cargo fmt --------- Co-authored-by: Copilot <175728472+Copilot@users.noreply.github.com>
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