Issues

• How to handle zero data

  dviraran/SingleR#165 · Filter by author Sreeranjini611 opened on Nov 16, 2025

• split test dataset and see differences in annotation

  dviraran/SingleR#164 · Filter by author yamihn opened on Oct 4, 2024
  1

• Error while downloading SingleR

  dviraran/SingleR#162 · Filter by author isaiao01 opened on May 20, 2024
  1

• Error: useNames = NA is defunct. Instead, specify either useNames = TRUE or useNames = FALSE. Traceback:

  dviraran/SingleR#161 · Filter by author ArzooShamoon opened on May 10, 2024
  1

• SingleR - "sc_data" is missing

  dviraran/SingleR#160 · Filter by author nitinmahajan20 opened on Apr 12, 2024
  1

• Positive correlation between the identity score of the right identities and the rest

  dviraran/SingleR#159 · Filter by author cesarsierran opened on Mar 19, 2024

• SingleR error

  dviraran/SingleR#158 · Filter by author Jessa135 opened on Feb 20, 2024
  1

• Annotate Seurat object of several patients

  dviraran/SingleR#157 · Filter by author LeaLe88 opened on Nov 30, 2023

• Microwell-Seq Mouse Cell Atlas link on README.md is not working

  dviraran/SingleR#155 · Filter by author vladimirkovacevic opened on Sep 25, 2023

• Questions about confidence score

  dviraran/SingleR#154 · Filter by author Kevis9 opened on Feb 24, 2023

• discriminant features

  dviraran/SingleR#153 · Filter by author antoine4ucsd opened on Jan 10, 2023

• issue with input?

  dviraran/SingleR#152 · Filter by author eliabrodsky1 opened on Jun 27, 2022

• SingleR() error

  dviraran/SingleR#150 · Filter by author Fathzadehm opened on Jan 3, 2022
  2

• Error in is.null(rownames(x)) && nrow(x) : invalid 'y' type in 'x && y'

  dviraran/SingleR#147 · Filter by author njtourtillott opened on Jul 9, 2021
  4

• Can't download MouseRNAseqData

  dviraran/SingleR#146 · Filter by author JiahuaQu opened on May 27, 2021

• the Seurat3.2.2 load and SingleR 1.0.1 conflict error

  dviraran/SingleR#145 · Filter by author honghh2018 opened on Feb 24, 2021
  1

• 'assay(<SingleCellExperiment>, i="character", ...)' invalid subscript 'i' 'dimnames' applied to non-array

  dviraran/SingleR#144 · Filter by author aanchalsharma833 opened on Feb 10, 2021

• can i annotate cells in specific cell types?

  dviraran/SingleR#143 · Filter by author hansonglee opened on Jan 11, 2021

• Retrieving a list of marker genes which were used assign cell type labels to clusters

  dviraran/SingleR#141 · Filter by author jdd1e16 opened on Sep 28, 2020
  1

• Cell labeling using SingleR in seurat

  dviraran/SingleR#140 · Filter by author ruchikabhat opened on Sep 8, 2020
  1

• Seurat object as input and normalization

  dviraran/SingleR#138 · Filter by author Diozao666 opened on Jul 27, 2020
  1

• plotDeltaDistribution not found

  dviraran/SingleR#137 · Filter by author ghost opened on Jul 22, 2020
  1

• how to create a new reference data set

  dviraran/SingleR#136 · Filter by author Shawn10312 opened on Jul 1, 2020
  4

• Adding annotations

  dviraran/SingleR#135 · Filter by author AteeqMKhaliq opened on Apr 19, 2020
  2

• can't find any of the functions related to reference data sets

  dviraran/SingleR#134 · Filter by author nawazahid opened on Apr 15, 2020
  1