Issues

• Batch CLI overrides

  dbaldridge-lab/sortscore#58 · Filter by author catchambers opened on Jul 13, 2026

• Console output cleanup

  dbaldridge-lab/sortscore#57 · Filter by author catchambers opened on Jul 13, 2026

• Specify custom pathogenic control variants for normalization

  dbaldridge-lab/sortscore#56 · Filter by author catchambers opened on Jul 13, 2026

• Batch normalization global averaging method

  dbaldridge-lab/sortscore#55 · Filter by author catchambers opened on Jul 13, 2026

• Test and clarify AA-only behavior in batch normalization

  dbaldridge-lab/sortscore#53 · Filter by author catchambers opened on May 13, 2026

• Output AA scores in batch mode

  dbaldridge-lab/sortscore#50 · Filter by author catchambers opened on May 11, 2026

• Heatmap themes

  Feature

  dbaldridge-lab/sortscore#49 · Filter by author catchambers opened on Mar 5, 2026 · V1.1

• Log cleanup

  dbaldridge-lab/sortscore#48 · Filter by author catchambers opened on Mar 5, 2026 · V1.1

• Separate DNA-level and AA-level stats into different functions or modes

  dbaldridge-lab/sortscore#47 · Filter by author catchambers opened on Feb 19, 2026

• Handle pre-annotated codon and nucleotide variants in count files

  dbaldridge-lab/sortscore#46 · Filter by author catchambers opened on Feb 19, 2026 · V1.1

• Increase Test Coverage for Activity Scoring

  dbaldridge-lab/sortscore#42 · Filter by author catchambers opened on Feb 16, 2026 · V1.1

• Detect mutagenesis_type or require this

  dbaldridge-lab/sortscore#40 · Filter by author catchambers opened on Feb 12, 2026 · V2
  1

• Simplify Scoring Output file

  dbaldridge-lab/sortscore#39 · Filter by author catchambers opened on Feb 12, 2026 · V1.1

• Remove sequence annotation redundancies

  dbaldridge-lab/sortscore#37 · Filter by author catchambers opened on Feb 12, 2026 · V1.1

• Add HGVS c. notation support when reading count filees

  dbaldridge-lab/sortscore#35 · Filter by author catchambers opened on Feb 12, 2026 · V2

• Change variant_type to plot_mode in heatmap plotting functions.

  dbaldridge-lab/sortscore#34 · Filter by author catchambers opened on Feb 12, 2026 · V1.1

• Test other variant formats in count files

  dbaldridge-lab/sortscore#33 · Filter by author catchambers opened on Feb 12, 2026 · V1.1
  1

• add SNV functionality

  dbaldridge-lab/sortscore#31 · Filter by author catchambers opened on Feb 11, 2026 · V2
  2

• Visual Breaks in Tiled Heatmap

  enhancement
  dbaldridge-lab/sortscore#28 · Filter by author catchambers opened on Feb 11, 2026 · V2
  2

• Less sparse heatmaps

  enhancement
  dbaldridge-lab/sortscore#27 · Filter by author catchambers opened on Feb 3, 2026 · V2

• Add docstrings to functions missing them

  documentation
  dbaldridge-lab/sortscore#24 · Filter by author catchambers opened on Feb 3, 2026 · V1.1

• Implement config testing

  dbaldridge-lab/sortscore#21 · Filter by author catchambers opened on Feb 3, 2026 · V1.1

• MaveDB score set object formatting

  enhancement
  dbaldridge-lab/sortscore#16 · Filter by author catchambers opened on Jan 8, 2026 · V2

• Histogram option to mark scores of ClinVar variants

  enhancement
  dbaldridge-lab/sortscore#14 · Filter by author catchambers opened on Nov 20, 2025 · V2

• Test plotting functions

  dbaldridge-lab/sortscore#13 · Filter by author catchambers opened on Sep 5, 2025 · V1.1