Issues

• Find co-localized cell-type pairs

  data2intelligence/SpaCET#68 · Filter by author AtlasMaroc opened on Oct 5, 2026

• Error in SpaCET.visualize.spatialFeature(SpaCET_obj, spatialType = "QualityControl", : object 'pp' not found

  data2intelligence/SpaCET#64 · Filter by author yu11111kon-wq opened on May 5, 2026
  2

• changes of coordinates using convert.Seurat() function

  data2intelligence/SpaCET#60 · Filter by author SoniaHermoso opened on Mar 20, 2026
  14

• Can the input file only be filtered_feature_bc_matrix.h5? Or can it be changed to raw_feature_bc_matrix.h5?

  data2intelligence/SpaCET#59 · Filter by author DoctorHDK opened on Mar 19, 2026
  1

• ERROR when spatialType = "CellTypeComposition"

  data2intelligence/SpaCET#58 · Filter by author Zhenglin-Lu opened on Feb 2, 2026
  1

• inferMal_cor(st.matrix.data, cancerType): missing parameter "signatureType"

  data2intelligence/SpaCET#57 · Filter by author wuFYaq opened on Nov 19, 2025
  1

• The imageSize parameter currently covers the entire image area.

  data2intelligence/SpaCET#55 · Filter by author MAXTIAN-BU opened on Oct 9, 2025
  8

• SpaCET.deconvolution function takes an unusually long time and was often suspended at some degree

  data2intelligence/SpaCET#54 · Filter by author zhangzj0 opened on Aug 30, 2025
  4

• Compare cell proportions across samples

  data2intelligence/SpaCET#53 · Filter by author xi11 opened on Aug 7, 2025
  8

• Turning off downsampling in SpaCET.deconvolution.matched.scRNAseq

  data2intelligence/SpaCET#52 · Filter by author ahwanpandey opened on Aug 6, 2025
  7

• Option to Zoom or Crop Images in SpaCET.visualize.spatialFeature

  data2intelligence/SpaCET#48 · Filter by author Altsplicer opened on Jun 20, 2025
  2

• L–R pairs mediating the cell-type pairs interaction (Fig. 5g)

  data2intelligence/SpaCET#43 · Filter by author SoniaHermoso opened on Mar 17, 2025
  1

• convert seurat object to spaCET object

  data2intelligence/SpaCET#40 · Filter by author alipirani88 opened on Dec 19, 2024
  6

• Issues and Suggestions for Malignant Cell Fraction Analysis

  data2intelligence/SpaCET#38 · Filter by author bhyu0217 opened on Nov 26, 2024
  4

• Reference genes for M2 Macrophages

  data2intelligence/SpaCET#37 · Filter by author jakesleighton opened on Nov 21, 2024
  1

• Work with Visium HD

  data2intelligence/SpaCET#35 · Filter by author alipirani88 opened on Nov 13, 2024
  9

• Clarify Malignant Cell State A and B

  data2intelligence/SpaCET#34 · Filter by author rln0005 opened on Nov 5, 2024
  1

• pathology annotation for colon cancer Slide-seq dataset

  data2intelligence/SpaCET#30 · Filter by author Peiyao-Z opened on Apr 5, 2024
  3

• SpaCET with other species? And GeneSetScore does not work in Win OS.

  data2intelligence/SpaCET#29 · Filter by author rln0005 opened on Apr 1, 2024
  4

• Error in h(simpleError(msg, call)) :

  data2intelligence/SpaCET#28 · Filter by author Qiannnzzz opened on Mar 21, 2024
  5

• Can I use the SpaCET for uncancerous tissues with the default parameters?

  data2intelligence/SpaCET#27 · Filter by author DingtaoHu opened on Feb 22, 2024
  2

• Windows system not support mclapply

  data2intelligence/SpaCET#26 · Filter by author ghjghjghkimo opened on Feb 22, 2024
  2

• Error in SpaCET.deconvolution

  data2intelligence/SpaCET#25 · Filter by author MartaCasado opened on Feb 21, 2024
  4

• Differential expression (like in your paper)

  data2intelligence/SpaCET#24 · Filter by author Magisterh1 opened on Dec 19, 2023
  1

• Error in wilcox.test

  data2intelligence/SpaCET#23 · Filter by author thineskrishna opened on Nov 25, 2023
  1