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1D tracks preview added #16

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Merged
AxisAlexNT merged 5 commits into from
Mar 21, 2026
Merged

1D tracks preview added #16

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7031e9e
Modern attempt to add support for 1D tracks rendering, still not work…
AxisAlexNT Mar 20, 2026
aa7deb2
Intermediate fixes for 1D tracks renderer
AxisAlexNT Mar 20, 2026
ad8acb7
1D tracks with precomputing but not smooth
AxisAlexNT Mar 20, 2026
8494e37
Multilevel priority pools added
AxisAlexNT Mar 21, 2026
87e372b
Tracks stability improved, added load-status panel
AxisAlexNT Mar 21, 2026
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18 changes: 10 additions & 8 deletions build.gradle.kts
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Original file line number Diff line number Diff line change
Expand Up @@ -41,6 +41,9 @@ repositories {
maven {
url = uri("https://maven.scijava.org/content/repositories/public/")
}
maven {
url = uri("https://nexus.bioviz.org/repository/maven-releases/")
}
}

val vertxVersion = "4.4.1"
Expand Down Expand Up @@ -68,7 +71,7 @@ val webUIRepositoryDirectory =
if (localWebUIRepositoryDirectory.asFile.exists()) localWebUIRepositoryDirectory else remoteWebUIRepositoryDirectory
val webUIRepositoryAddress = "https://github.com/ctlab/HiCT_WebUI.git"
val webUITargetDirectory = layout.projectDirectory.dir("src/main/resources/webui")
val webUIBranch = "dev-0.1.5"
val webUIBranch = "migrate-converters-update-ui-1dtracks"

version = readVersion()

Expand Down Expand Up @@ -132,6 +135,8 @@ dependencies {
// https://mvnrepository.com/artifact/org.scijava/native-lib-loader
implementation("org.scijava:native-lib-loader:2.4.0")
implementation("info.picocli:picocli:4.7.6")
implementation("com.github.samtools:htsjdk:4.1.3")
implementation("org.broad.igv:bigwig:3.0.0")


}
Expand Down Expand Up @@ -252,13 +257,10 @@ tasks.register("buildWebUI") {
doLast {
try {
if (localWebUIRepositoryDirectory.asFile.exists()) {
println("Using local HiCT_WebUI checkout at ${localWebUIRepositoryDirectory.asFile.absolutePath}")
project.exec {
commandLine("git", "checkout", webUIBranch)
workingDir = localWebUIRepositoryDirectory.asFile
standardOutput = System.out
isIgnoreExitValue = true
}
println(
"Using local HiCT_WebUI checkout at ${localWebUIRepositoryDirectory.asFile.absolutePath} " +
"(branch/working tree will not be modified by Gradle)"
)
project.exec {
commandLine("npm", "install")
workingDir = localWebUIRepositoryDirectory.asFile
Expand Down
2 changes: 1 addition & 1 deletion ldbg.sh
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@@ -1,4 +1,4 @@
#!/bin/bash
export VERTXWEB_ENVIRONMENT="dev"
SCRIPT_DIR=$( cd -- "$( dirname -- "${BASH_SOURCE[0]}" )" &> /dev/null && pwd )
VXPORT=5000 DATA_DIR="/mnt/Models/HiCT/data/" TILE_SIZE=256 java -jar ${SCRIPT_DIR}/build/libs/hict_server-*-fat.jar
VXPORT=5000 DATA_DIR="/mnt/Models/HiCT/data/" TILE_SIZE=256 java -jar ${SCRIPT_DIR}/build/libs/hict_server-*-fat.jar $@
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