VeloTrace Reconciles Divergent Velocity and Trajectory in Single-cell Transcriptomics with Deep Neural ODE

VeloTrace is a Python package for RNA velocity trajectory inference

Installation

# Conda 
conda env create -f environment.yml

# Pip
python -m venv .venv && source .venv/bin/activate
pip install -r requirements.txt

Tutorial

we have added Jupyter notebooks showing how to reproduce the main figure panels, along with all required processed data files(data&data_to_plot).