Search results

different segments on CopyNumber plot

Status: Open.

#137 In ccagc/QDNAseq;

· reyescapilla opened on May 28, 2026

Issue with QDNAseq Segmentation Output Formatting

Status: Open.

#134 In ccagc/QDNAseq;

· jihen-lau opened on Apr 4, 2025

Very low (negative) values in readcounts, copynumbers, copynumbersnormalized dataframes

Status: Open.

#133 In ccagc/QDNAseq;

· alexvasilikop opened on Mar 31, 2025

"Warning: Recycling array of length 1 in vector-array arithmetic is deprecated"

question

Status: Open.

#132 In ccagc/QDNAseq;

· griffinfarrow opened on Mar 20, 2025

How to get annotated plot for cnv with gene names on the amplified and deleted regions?

Status: Open.

#131 In ccagc/QDNAseq;

· ralanany opened on Feb 25, 2025

Blacklisted regions in applyFilter function without providing a bed file

Status: Open.

#128 In ccagc/QDNAseq;

· alexvasilikop opened on Jul 8, 2024

Genome build hg38

Status: Open.

#127 In ccagc/QDNAseq;

· henryone0910 opened on May 8, 2024

Genome for mm39

Status: Open.

#126 In ccagc/QDNAseq;

· tashaann opened on May 8, 2024

T2T genome support

Status: Open.

#125 In ccagc/QDNAseq;

· liuyang2006 opened on May 2, 2024

R CMD check: Sporadic test errors; Error in diff2(x, differences = diff) : names() applied to a non-vector

Status: Open.

#123 In ccagc/QDNAseq;

· HenrikBengtsson opened on Feb 14, 2024

·  

Next release

Is there a way to hack QDNAseq plot methods to plot a point on the log2 ratio plots?

Status: Open.

#122 In ccagc/QDNAseq;

· zetamui opened on Feb 2, 2024

Output VCF is not valid due to symbolic allele used as reference allele

help wanted

Status: Open.

#121 In ccagc/QDNAseq;

· vlshesketh opened on Jan 15, 2024

·  

Next release