Spectronaut WebUI

A NiceGUI-based web interface for Spectronaut proteomics software, designed to simplify mass spectrometry data processing workflows in cloud and command-line environments.

Note: This is an independent tool and is not officially affiliated with or endorsed by Biognosys AG.

Features

• Web-based GUI - Modern, intuitive interface built with NiceGUI
• Multiple Workflows - Support for Convert, DirectDIA, DIA, and Combine workflows
• File Management - Interactive file browser for local file selection
• Batch Processing - Process multiple files with metadata (conditions, replicates, fractions)
• Real-time Logging - Live console output during processing
• Process Control - Start, monitor, and abort long-running processes

Quick Start

Installation

pip install spectronaut-webui

Configuration

Generate a default configuration file:

spectronaut-ui-config

Edit ~/.spectronaut_webui/config.json to set your Spectronaut command path and license key.

Run

Start the web interface:

spectronaut-ui

Then open your browser to http://localhost:8080.

Documentation

• Installation Guide - Detailed installation instructions
• Configuration - Configuration options and setup
• Usage Guide - Workflow tutorials and examples

Requirements

• Python 3.10 or higher
• Spectronaut Command Line Interface
• Valid Spectronaut license key

License

MIT License - see LICENSE file for details.

Author

Vladimir Gorshkov