Donor LinkML Model

.github/workflows/donor_generate_other_formats.yaml

@@ -0,0 +1,20 @@
+name: generating other formats for donor
+
+on:
+  pull_request_target:
+    types: [opened, synchronize]
+    paths:
+      - 'linkml-schema/donor.yaml'
+      - 'linkml-schema/bican_biolink.yaml'
+      - 'linkml-schema/bican_prov.yaml'
+
+permissions:
+  contents: write
+  pull-requests: write
+
+
+jobs:
+  generate_from_reusable:
+    uses: brain-bican/models/.github/workflows/reusable-generate_other_formats.yaml@main
+    with:
+      model_name: donor

.github/workflows/generate_docs.yaml

@@ -38,6 +38,7 @@ jobs:
           cp erdiagram-autogen/library_generation.md docs/library_generation.md
           cp erdiagram-autogen/assertion_evidence.md docs/assertion_evidence.md
           cp erdiagram-autogen/bke_taxonomy.md docs/bke_taxonomy.md
+          cp erdiagram-autogen/donor.md docs/donor.md
           gen-doc -d docs linkml-schema/library_generation.yaml
           mv docs/index.md docs/index_library_generation.md
           gen-doc -d docs linkml-schema/anatomical_structure.yaml
@@ -48,6 +49,8 @@ jobs:
           mv docs/index.md docs/index_assertion_evidence.md
           gen-doc -d docs linkml-schema/bke_taxonomy.yaml
           mv docs/index.md docs/index_bke_taxonomy.md
+          gen-doc -d docs linkml-schema/donor.yaml
+          mv docs/index.md docs/index_donor.md
           mv docs/index_main.md docs/index.md
 
 

.github/workflows/reusable-generate_other_formats.yaml

@@ -67,7 +67,7 @@ jobs:
             echo "jsonld-context generated";
             linkml generate pydantic ${name}.yaml > ../models_py-autogen/${name}.py;
             echo "pydantic model generated";
-            if [ ${name} = "library_generation" ] || [ ${name} = "genome_annotation" ] || [ ${name} = "bke_taxonomy" ] || [ ${name} = "anatomical_structure" ]; then
+            if [ ${name} = "library_generation" ] || [ ${name} = "genome_annotation" ] || [ ${name} = "bke_taxonomy" ] || [ ${name} = "anatomical_structure"  || [ ${name} = "donor" ]]; then
               echo "Fixing erdiagrams for $name";
               python ../utils/fix_and_create_erdiagram.py;
             else