Unite attributes librarygeneration 20251212 - #211

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puja-trivedi wants to merge 26 commits into

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puja-trivedi:unite_attributes_librarygeneration_20251212

Commits on Dec 13, 2025

changed CellDissociation.cell_dissociation_process_date to DissociatedCellSample.sample_preparation_date based off NIMP terminology list and MOWG spreadsheet
puja-trivedi
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adb61c2
changed CellEnrichment.cell_enrichment_process_date to EnrichedCellSample.sample_preparation_date based off NIMP terminology list and MOWG spreadsheet
puja-trivedi
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ed3af15
fixed typo in nimp terminology nhash id for EnrichedCellSample.cell_label_barcode. Also generalized dissociated_cell_sample_cell_label_barcode valueset name to cell_label_barcode since both Enriche…
puja-trivedi
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2e06a62
updated EnrichedCellSample.histone_modification_marker / PD-ESESLW44 based off NIMP terminology list and MOWG spreadsheet
puja-trivedi
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28e8746
updated PD-XUXUNM35 based off NIMP terminology list and MOWG spreadsheet
puja-trivedi
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0d1bb37
reassigned attributed from CdnaAmplification to AmplifiedCdna based off NIMP terminology list and MOWG spreadsheet
puja-trivedi
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37e0aef
reassigned attributes from CellBarcoding to BarcodedCellSample based off NIMP terminology list and MOWG spreadsheet. Also added more permissible values to barcoded_cell_sample_technique based off…
puja-trivedi
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cbe41a2

Commits on Dec 14, 2025

Commits on Dec 15, 2025

filled in missing information about Donor attributes based off NIMP terminology list and MOWG spreadsheet
puja-trivedi
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2869e8c
filled in missing information about *.name based off NIMP terminology list and MOWG spreadsheet
puja-trivedi
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ce0cced
changed assignment of BICAN UUID to 'exact_mappings' instead of 'slot_uri'
puja-trivedi
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69b579b
updated column header names, no changes to yaml model were made
puja-trivedi
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0c44644
generate another formats for library_generation model(s)

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f54acae
Merge branch 'main' of https://github.com/atlaskb/models into unite_attributes_librarygeneration_20251212
puja-trivedi
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f5e8b66
Merge branch 'unite_attributes_librarygeneration_20251212' of https://github.com/puja-trivedi/models into unite_attributes_librarygeneration_20251212
puja-trivedi
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6a66da0
fixed type in LibraryPool.name's description
puja-trivedi
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3fa03f4
generate another formats for library_generation model(s)

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2c82f01

Commits on Dec 17, 2025

removed slots and attributes associated with Donor because we will be created a separate Donor Schema
puja-trivedi
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e737c4e

Commits on Jan 21, 2026

added 2 attributes: LibraryPool.tube_barcode and LibraryPool.flowcell
puja-trivedi
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a18c059

Commits on Jan 22, 2026

added 3 attributes: DissociatedCellSample.patched_cell_structure, BarcodedCellSample.tag_local_name, LibraryAliquot.fastq_file_alignment_status. Added NIMP ID to slot:DissectionRoiPolygon.name. Ad…
puja-trivedi
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d22fd38
Merge branch 'unite_attributes_librarygeneration_20251212' of https://github.com/puja-trivedi/models into unite_attributes_librarygeneration_20251212
puja-trivedi
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da479ed
generate another formats for library_generation model(s)

action@github.com
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action@github.com
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8f72dde
updated mapping of xref to correct NIMP attribute for each class (className_nhash_id). also removed extra spaces from some cells. Also renamed SpecimenDissectionROI to ROI to match NIMP terminology…
puja-trivedi
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447cfc0
Merge branch 'unite_attributes_librarygeneration_20251212' of https://github.com/puja-trivedi/models into unite_attributes_librarygeneration_20251212
puja-trivedi
committed
56a8b6f
generate another formats for library_generation model(s)

action@github.com
authored and
action@github.com
committed
2650a67