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Aug 20, 2026
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Refresh cran-comments for the 2.4.0 submission #10

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39 changes: 19 additions & 20 deletions cran-comments.md
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This is an update to the CRAN release `phontrast` 2.3.1.

Version 2.4.0 is being submitted three days after 2.3.1 because it corrects
release metadata that users currently see: the GitHub 2.4.0 tag initially
retained `Version: 2.3.1`, and the package citation remained frozen at version
2.0.0. The tag, package version, NEWS, version-specific Zenodo DOI, and
version-aware package citation are now consistent.
Version 2.4.0 corrects public release metadata and adds one opt-in feature.
The 2.4.0 GitHub tag initially retained `Version: 2.3.1`, and the package
citation remained frozen at version 2.0.0; the package version, NEWS, tag,
version-specific Zenodo DOI, and version-aware citation are now consistent.
If this update arrives close enough to 2.3.1 to trigger the
days-since-last-update note, the short interval is to correct the public
version and citation metadata that users currently see.

## Changes

- Added the opt-in proportion-standardized Pillai estimates documented in
`NEWS.md`; existing defaults and the original return fields are unchanged.
`NEWS.md` (`pillai_overlap(proportion_standardized = TRUE)`); existing
defaults and the original return fields are unchanged.
- Corrected the package version metadata to 2.4.0.
- Replaced the stale citation with a version-aware citation for Grant M. Berry
and the 2.4.0 Zenodo DOI <doi:10.5281/zenodo.21864533>.
Expand All @@ -20,23 +23,19 @@ version-aware package citation are now consistent.

## Test environments

- Local: macOS 26.5.2 (aarch64-apple-darwin23), R 4.6.1,
`R CMD check --as-cran --no-manual`
- GitHub Actions: Ubuntu latest, R release, `R CMD check`
- Local: Ubuntu 24.04.4, R 4.3.3, `R CMD check --no-manual --timings`
(offline build environment; the network-dependent CRAN incoming checks
could not run there)
- win-builder: R-devel and R-release, `R CMD check --as-cran`
- GitHub Actions: Ubuntu latest, R release, `R CMD check --as-cran`

## R CMD check results

0 errors | 0 warnings | 1 note

The sole note is the expected incoming-check note:
The sole local note is an example-timing note for `estimate_jsd`
(6.2s elapsed) produced on a slow container; the example is unchanged from
the accepted 2.3.1 release, which produced no timing note on CRAN hardware.

```
Days since last update: 3
```

The unusually short interval is necessary to correct the public package
version and citation metadata described above.

The local PDF-manual check could not run because the local TeX installation is
missing `inconsolata.sty`. All Rd checks, examples, tests, vignettes, and the
HTML manual check completed successfully.
The local PDF-manual check was skipped (no TeX installation); all Rd checks,
examples, tests, and vignettes completed successfully.
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