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Bump GitHub Actions to Node 24 majors; fix main-push race condition #1

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Merged
jeffreybarrick merged 1 commit into from
Jun 25, 2026
Merged

Bump GitHub Actions to Node 24 majors; fix main-push race condition #1

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20 changes: 13 additions & 7 deletions .github/workflows/build-and-publish.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -13,14 +13,18 @@ on:
permissions:
contents: write

concurrency:
group: ${{ github.workflow }}
cancel-in-progress: false

jobs:
check:
runs-on: ubuntu-latest
outputs:
has_new_commit: ${{ steps.check.outputs.has_new_commit }}
remote_sha: ${{ steps.check.outputs.remote_sha }}
steps:
- uses: actions/checkout@v4
- uses: actions/checkout@v7
- name: Check for new breseq commit
id: check
env:
Expand All @@ -44,9 +48,9 @@ jobs:
subdir: osx-64
runs-on: ${{ matrix.os }}
steps:
- uses: actions/checkout@v4
- uses: actions/checkout@v7

- uses: conda-incubator/setup-miniconda@v3
- uses: conda-incubator/setup-miniconda@v4
with:
miniforge-version: latest
channels: conda-forge,bioconda
Expand All @@ -67,7 +71,7 @@ jobs:
--output-folder ./built-pkgs

- name: Upload built package
uses: actions/upload-artifact@v4
uses: actions/upload-artifact@v7
with:
name: pkg-${{ matrix.subdir }}
path: built-pkgs/${{ matrix.subdir }}/*.conda
Expand All @@ -78,16 +82,16 @@ jobs:
if: needs.check.outputs.has_new_commit == 'true'
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v4
- uses: actions/checkout@v7
with:
fetch-depth: 0

- uses: actions/download-artifact@v4
- uses: actions/download-artifact@v7
with:
pattern: pkg-*
path: downloaded-pkgs

- uses: conda-incubator/setup-miniconda@v3
- uses: conda-incubator/setup-miniconda@v4
with:
miniforge-version: latest
channels: conda-forge
Expand Down Expand Up @@ -128,6 +132,8 @@ jobs:

- name: Update state file on main
run: |
git fetch origin main
git reset --hard origin/main
cat > state/last-published-commit.json <<EOF
{
"breseq_commit_sha": "${{ needs.check.outputs.remote_sha }}",
Expand Down
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