many updates -> copilot/IMPROVEMENTS_SUMMARY.md

[art-test-stack]

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[art-test-stack]

@copilot solve conflicts by prefering lastest commits. Most of conflicts appears as they were done first to clean lint

[Copilot]

@art-test-stack I've opened a new pull request, #4, to work on those changes. Once the pull request is ready, I'll request review from you.

[Copilot]

Pull request overview

This PR expands the bibliography manager with Google Scholar ingestion, category ID management, and an initial SQLAlchemy-backed storage path, while also updating CSV storage/markdown output to preserve ArxivID as a string and adjusting tests/docs accordingly.

Changes:

• Add Google Scholar (SerpAPI) search + interactive confirmation flow and wire it into the CLI (add-scholar, enhanced add).
• Extend CSV schema with an ArxivID column (string-preserved) and add scholar_id/arxiv_id plumbing.
• Introduce a SQLAlchemy ORM + DB migration/export commands, plus extensive documentation updates.

Reviewed changes

Copilot reviewed 24 out of 28 changed files in this pull request and generated 13 comments.

Show a summary per file

File	Description
tests/test_storage.py	Updates storage tests for ArxivID and scholar_id DOI fallback; improves temp file handling.
tests/test_metadata.py	Adds temp-dir/file fixtures (currently unused by tests).
tests/test_markdown.py	Updates temp CSV fixture to use a temp directory.
tests/test_arxiv.py	Adds temp-dir/file fixtures and asserts returned arxiv_id.
tests/README.md	Adds a short test-suite overview and commands.
test_output.md	Adds a sample/generated markdown output table including ArxivID.
references.md	Adds a large generated references markdown file with category tables + footer refs.
pyproject.toml	Removes networks dependency; keeps script entrypoint formatting.
pkg/mybib/utils.py	Updates author display formatting (et al. + team name handling).
pkg/mybib/ui.py	Changes confirmation default behavior (Enter defaults to “yes”).
pkg/mybib/storage.py	Adds ArxivID column handling and scholar_id DOI fallback in CSV storage.
pkg/mybib/scholar.py	New: SerpAPI Google Scholar search + metadata extraction + confirmation flow.
pkg/mybib/models.py	New: SQLAlchemy ORM models + engine/session helpers.
pkg/mybib/markdown.py	Ensures ArxivID stays string-y for markdown display.
pkg/mybib/db_storage.py	New: database adapter + CSV migration/export routines + CLI support.
pkg/mybib/cli.py	Adds add-scholar, category prompting, and DB init/migrate/export commands.
pkg/mybib/categories.py	New: persistent ID→name category mapping in categories.json.
pkg/mybib/arxiv.py	Adds arxiv_id to returned metadata dict.
copilot/TEST_README.md	New internal doc describing tests and how to run them.
copilot/QUICKSTART.md	New quickstart for Scholar integration.
copilot/IMPROVEMENTS_SUMMARY.md	New summary doc for the changes and claimed fixes.
copilot/IMPLEMENTATION_SUMMARY.md	New technical implementation notes for Scholar integration.
copilot/GOOGLE_SCHOLAR_README.md	New end-user documentation for Scholar integration.
copilot/FILES_MODIFIED.md	New index of changed/created files.
copilot/CLI_IMPROVEMENTS.md	New doc describing CLI UX enhancements.
copilot/CITATION_GRAPH.md	New doc describing the citation graph feature.
README.md	Updates install/usage docs + adds v2.0 improvements, DB commands, and project structure.
.gitignore	Ignores .env, categories.json, and *.bib outputs.

Comments suppressed due to low confidence (1)

pkg/mybib/ui.py:83

• Changing confirm_action() to default to confirmation on Enter (default=True) makes add/migrate/export flows much easier to accept accidentally, since most call sites don’t pass an explicit default. If these prompts are meant to guard potentially-destructive actions, consider keeping the default as False (explicit opt-in) and only using default=True for low-risk prompts.

def confirm_action(prompt: str, default: bool = True) -> bool:
    """Show a confirmation prompt with rich styling.
    
    Args:
        prompt: The question to ask
        default: Default response if user just presses enter (default: True)
        
    Returns:
        True if confirmed, False otherwise
    """
    return Confirm.ask(prompt, default=default, console=console)

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