alfnie · tiborauer · Aug 5, 2024 · Sep 4, 2024 · Sep 4, 2024 · Sep 5, 2024
diff --git a/conn.m b/conn.m
@@ -28,6 +28,11 @@
 connver='22.v2407';
 dodebug=false;
 
+% Octave-compatibility
+if logical(exist('OCTAVE_VERSION', 'builtin'))
+    addpath(fullfile(which('conn'),'utils','octave'));
+end
+
 global CONN_h CONN_x CONN_gui;
 if dodebug, dbstop if caught error; end
 me=[]; 

diff --git a/connROIorder.mat b/connROIorder.mat
diff --git a/conn_msghelp.mat b/conn_msghelp.mat
diff --git a/conn_process.m b/conn_process.m
diff --git a/conn_savematfile.m b/conn_savematfile.m
@@ -16,6 +16,13 @@ function conn_savematfile(filename,varargin)
         data.(varargin{idx})=evalin('caller',varargin{idx});
     end
 end
+
+% Ensure Octave-compaltibility
+if ~ismember('-v7', varargin(opts))
+    varargin = [varargin, {'-v7'}];
+    opts(end+1) = true;
+end
+
 if any(conn_server('util_isremotefile',filename)), 
     if ~isempty(regexp(filename,'\<SPM\.mat$'))&&isfield(data,'SPM')
         try, if isfield(data.SPM,'swd'), data.SPM.swd=conn_server('util_localfile',data.SPM.swd); end; end

diff --git a/conn_surf_sphere.mat b/conn_surf_sphere.mat
diff --git a/rois/atlas.groups.mat b/rois/atlas.groups.mat
diff --git a/rois/networks.groups.mat b/rois/networks.groups.mat
diff --git a/utils/octave/getReport.m b/utils/octave/getReport.m
@@ -0,0 +1,3 @@
+function msg = getReport(me,varargin)
+    msg = me.message;
+end
diff --git a/utils/octave/resave_mats.m b/utils/octave/resave_mats.m
@@ -0,0 +1,19 @@
+CONNDIR = fileparts(which('conn'));
+
+for fn = dir(fullfile(CONNDIR,'**/*.mat'))'
+    fnfull = fullfile(fn.folder, fn.name);
+    fprintf('Processing %s...',fnfull);
+
+    % Load content
+    vars = load(fnfull);
+    nameVars = fieldnames(vars);
+    cellfun(@(v) assignin('base',v,vars.(v)), nameVars);
+
+    % Re-save
+    save(fnfull,nameVars{:},'-v7')
+
+    % Clear
+    cellfun(@clear, nameVars);
+
+    fprintf('Done!\n')
+end
diff --git a/utils/otherrois/PFC.mat b/utils/otherrois/PFC.mat
diff --git a/utils/otherrois/PPC.mat b/utils/otherrois/PPC.mat
diff --git a/utils/otherrois/TD_brodmann.mat b/utils/otherrois/TD_brodmann.mat
diff --git a/utils/otherrois/V1.mat b/utils/otherrois/V1.mat
diff --git a/utils/otherrois/V2.mat b/utils/otherrois/V2.mat
diff --git a/utils/otherrois/V5.mat b/utils/otherrois/V5.mat
diff --git a/utils/preprocessingpipelines/defaultMNISScombined.mat b/utils/preprocessingpipelines/defaultMNISScombined.mat
diff --git a/utils/preprocessingpipelines/defaultMNI_FMlegacy2018.mat b/utils/preprocessingpipelines/defaultMNI_FMlegacy2018.mat
diff --git a/utils/preprocessingpipelines/defaultMNI_fastacquisitions.mat b/utils/preprocessingpipelines/defaultMNI_fastacquisitions.mat
diff --git a/utils/preprocessingpipelines/defaultMNI_indirectnorm.mat b/utils/preprocessingpipelines/defaultMNI_indirectnorm.mat
diff --git a/utils/preprocessingpipelines/defaultMNI_legacy2016.mat b/utils/preprocessingpipelines/defaultMNI_legacy2016.mat
diff --git a/utils/preprocessingpipelines/defaultMNI_legacy2023.mat b/utils/preprocessingpipelines/defaultMNI_legacy2023.mat
diff --git a/utils/preprocessingpipelines/defaultMNI_withlesion.mat b/utils/preprocessingpipelines/defaultMNI_withlesion.mat
diff --git a/utils/preprocessingpipelines/defaultSS_FMlegacy2018.mat b/utils/preprocessingpipelines/defaultSS_FMlegacy2018.mat
diff --git a/utils/preprocessingpipelines/defaultSS_segmentbeforecoreg.mat b/utils/preprocessingpipelines/defaultSS_segmentbeforecoreg.mat
diff --git a/utils/surf/lhrh.mat b/utils/surf/lhrh.mat
diff --git a/utils/surf/surf_top.mat b/utils/surf/surf_top.mat