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Merged
acreyes merged 2 commits into from
Apr 23, 2026
Merged

Bump dependencies #45

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3cf4b0c
bump dependencies
acreyes Apr 23, 2026
b804f37
parthenon changes
acreyes Apr 23, 2026
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2 changes: 1 addition & 1 deletion external/parthenon
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Submodule parthenon updated 80 files
+9 −1 CHANGELOG.md
+37 −9 doc/sphinx/src/README.rst
+13 −3 doc/sphinx/src/interface/state.rst
+10 −5 doc/sphinx/src/parthenon_manager.rst
+1 −1 doc/sphinx/src/particles.rst
+3 −2 doc/sphinx/src/solvers.rst
+4 −1 example/particle_leapfrog/main.cpp
+7 −1 example/particle_leapfrog/particle_leapfrog.cpp
+4 −1 example/particle_leapfrog/particle_leapfrog.hpp
+393 −361 example/particle_tracers/particle_tracers.cpp
+15 −7 example/particle_tracers/particle_tracers.hpp
+1 −1 external/Kokkos
+23 −16 src/CMakeLists.txt
+1 −1 src/amr_criteria/refinement_package.cpp
+6 −1 src/application_input.hpp
+8 −0 src/argument_parser.hpp
+3 −3 src/bvals/boundary_conditions_generic.hpp
+5 −0 src/driver/driver.cpp
+4 −3 src/globals.cpp
+1 −0 src/globals.hpp
+12 −17 src/interface/mesh_data.hpp
+12 −17 src/interface/meshblock_data.hpp
+8 −8 src/interface/metadata.hpp
+6 −1 src/interface/state_descriptor.hpp
+5 −4 src/interface/swarm.cpp
+13 −0 src/interface/swarm.hpp
+1 −1 src/interface/swarm_comms.cpp
+61 −31 src/interface/swarm_container.cpp
+11 −7 src/interface/swarm_container.hpp
+2 −2 src/interface/update.cpp
+2 −2 src/interface/update.hpp
+1 −1 src/interface/variable_pack.hpp
+108 −17 src/mesh/mesh.cpp
+6 −2 src/mesh/mesh.hpp
+6 −1 src/mesh/meshblock.cpp
+4 −1 src/mesh/meshblock.hpp
+1 −1 src/outputs/outputs.cpp
+1 −1 src/outputs/parthenon_hdf5.cpp
+8 −4 src/outputs/parthenon_hdf5.hpp
+1 −1 src/outputs/parthenon_xdmf.cpp
+1 −1 src/pack/block_selector.hpp
+18 −13 src/pack/default_names.hpp
+12 −5 src/pack/pack_utils.hpp
+1 −1 src/pack/sparse_pack/make_pack_descriptor.cpp
+5 −5 src/pack/sparse_pack/make_pack_descriptor.hpp
+1 −1 src/pack/sparse_pack/pack_descriptor.cpp
+3 −3 src/pack/sparse_pack/pack_descriptor.hpp
+1 −1 src/pack/sparse_pack/sparse_pack.cpp
+35 −21 src/pack/sparse_pack/sparse_pack.hpp
+4 −4 src/pack/sparse_pack/sparse_pack_base.cpp
+6 −7 src/pack/sparse_pack/sparse_pack_base.hpp
+1 −1 src/pack/sparse_pack/sparse_pack_cache.cpp
+5 −5 src/pack/sparse_pack/sparse_pack_cache.hpp
+7 −5 src/pack/swarm_pack/make_swarm_pack_descriptor.hpp
+27 −13 src/pack/swarm_pack/swarm_pack.hpp
+200 −0 src/pack/swarm_pack/swarm_pack_base.cpp
+84 −0 src/pack/swarm_pack/swarm_pack_base.hpp
+64 −0 src/pack/swarm_pack/swarm_pack_cache.cpp
+53 −0 src/pack/swarm_pack/swarm_pack_cache.hpp
+37 −0 src/pack/swarm_pack/swarm_pack_descriptor.cpp
+66 −0 src/pack/swarm_pack/swarm_pack_descriptor.hpp
+48 −0 src/pack/swarm_pack/swarm_pack_types.hpp
+0 −254 src/pack/swarm_pack_base.hpp
+7 −1 src/parthenon/driver.hpp
+5 −5 src/parthenon/package.hpp
+1 −1 src/parthenon/prelude.hpp
+24 −21 src/parthenon_array_generic.hpp
+5 −0 src/parthenon_manager.cpp
+2 −2 src/sparse/sparse_management.hpp
+69 −143 src/utils/concepts_lite.hpp
+6 −4 src/utils/object_pool.hpp
+1 −0 src/utils/reductions.hpp
+1 −0 src/utils/summable_array.hpp
+4 −0 src/utils/utils.hpp
+96 −0 src/utils/watchdog.cpp
+1 −1 tst/unit/test_concepts_lite.cpp
+1 −1 tst/unit/test_index_split.cpp
+1 −1 tst/unit/test_scratch_variables.cpp
+2 −2 tst/unit/test_sparse_pack.cpp
+1 −1 tst/unit/test_swarm.cpp
2 changes: 1 addition & 1 deletion external/singularity-eos
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Submodule singularity-eos updated 40 files
+2 −0 .github/PULL_REQUEST_TEMPLATE.md
+1 −0 .github/workflows/tests.yml
+3 −0 .gitignore
+1 −1 .gitlab/common.yml
+5 −11 .gitlab/kessel.sh
+7 −4 .kessel/workflows/cmake.py
+7 −1 CHANGELOG.md
+27 −0 doc/sphinx/src/contributing.rst
+23 −0 doc/sphinx/src/using-eos.rst
+125 −0 plan_histories/MR629-2026-04-06-eos-base-macro-plan.md
+103 −0 plan_histories/MR629-2026-04-06-eos-variant-macro-strategy.md
+72 −0 plan_histories/MR629-2026-04-07-eospac-vector-wrapper-macro-plan.md
+186 −0 plan_histories/MR630-2026-04-09-modifier-vector-macro-proposal.md
+41 −21 python/module.hpp
+47 −0 sesame2spiner/examples/all_in_one.dat
+51 −0 sesame2spiner/examples/unit_tests/mats.dat
+1 −9 sesame2spiner/generate_files.cpp
+0 −1 sesame2spiner/io_eospac.cpp
+85 −0 sesame2spiner/parser.cpp
+9 −0 sesame2spiner/parser.hpp
+1 −0 singularity-eos/CMakeLists.txt
+25 −4 singularity-eos/base/indexable_types.hpp
+7 −2 singularity-eos/base/robust_utils.hpp
+3 −3 singularity-eos/base/root-finding-1d/root_finding.hpp
+4 −4 singularity-eos/closure/mixed_cell_models.hpp
+164 −507 singularity-eos/eos/eos_base.hpp
+3 −3 singularity-eos/eos/eos_carnahan_starling.hpp
+317 −279 singularity-eos/eos/eos_eospac.hpp
+224 −812 singularity-eos/eos/eos_variant.hpp
+51 −156 singularity-eos/eos/modifiers/eos_unitsystem.hpp
+122 −79 singularity-eos/eos/modifiers/floored_energy.hpp
+86 −0 singularity-eos/eos/modifiers/modifier_vector_macros.hpp
+107 −67 singularity-eos/eos/modifiers/ramps_eos.hpp
+33 −141 singularity-eos/eos/modifiers/scaled_eos.hpp
+120 −75 singularity-eos/eos/modifiers/shifted_eos.hpp
+1 −0 test/CMakeLists.txt
+2 −2 test/test_eos_gruneisen.cpp
+86 −0 test/test_eos_vector.cpp
+77 −0 test/test_robust_utils.cpp
+1 −1 utils/ports-of-call
2 changes: 1 addition & 1 deletion src/grid/geometry.hpp
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Original file line number Diff line number Diff line change
Expand Up @@ -6,7 +6,7 @@
#include <Kokkos_Macros.hpp>

#include <coordinates/coordinates.hpp>
#include <pack/sparse_pack.hpp>
#include <pack/sparse_pack/sparse_pack.hpp>
#include <ports-of-call/variant.hpp>

#include "dispatcher/options.hpp"
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9 changes: 4 additions & 5 deletions src/grid/pybind/grid_bindings.cpp
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Original file line number Diff line number Diff line change
Expand Up @@ -5,9 +5,9 @@
#include <string>
#include <vector>

#include <pack/make_pack_descriptor.hpp>
#include <pack/pack_descriptor.hpp>
#include <pack/sparse_pack.hpp>
#include <pack/sparse_pack/make_pack_descriptor.hpp>
#include <pack/sparse_pack/pack_descriptor.hpp>
#include <pack/sparse_pack/sparse_pack.hpp>

#include "kamayan/pybind/kamayan_bindings.hpp"
#include "kamayan/pybind/kamayan_nanobind.h"
Expand All @@ -18,7 +18,6 @@
#include "kamayan_utils/parallel.hpp"
#include "kamayan_utils/type_list.hpp"
#include "pack/pack_utils.hpp"
#include "pack/sparse_pack_base.hpp"

namespace kamayan {

Expand Down Expand Up @@ -60,7 +59,7 @@ struct SparsePack_py {

private:
parthenon::SparsePack<> pack;
parthenon::SparsePackIdxMap map;
parthenon::PackIdxMap map;
std::weak_ptr<Config> config_;
};

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