Pax v640 newtruth qing

[mcfatelin]

In order to not make things too complicated, I opened a new branch based on the modified branch.

The main functions for this update are following:

1. Add the module for simulating s1&s2 with area correlated, based on an input of 2-D band: Log10(S2/S1) verse S1.
2. Put the customized minitree generation under run_fax.sh so that we don't need to generate the library twice.

The syntax for batch "MidwayBatch_AreaCorrelatedS1S2.py":

python MidwayBatch_AreaCorrelatedS1S2.py ....
<Output path (abs.)>
< number of jobs>
< number of events in each job>
< enable PMT after pulses ?(0 for disable)>
< enable S2 after pulses ?(0 for disable)>
< 2D band for S1-S2 area correlation (abs.)>
< g1 value>
< g2 value>
< If use Public node (0 for no(xenon1t nodes); 1 for yes; 2 for kicp nodes)>

The input 2-D band is contained in pol file. The script MakePickleFromHistogram.py will help you convert one TH2D into the format required.

python MakePickleFromHistogram.py .....

[pdeperio]

This PR also includes TruthSorting_arrays.py in the full chain script montecarlo/run_sim.sh. @jhowl01, @mcfatelin Is it fully updated here with all the new truth info?

[pdeperio]

Remove this

[pdeperio]

Remove this

[JosephJHowlett]

Sorry @pdeperio somehow I missed your most recent message, fixed the conflicts now. Note that my other pull request will update TruthSorting_arrays.py again, adding the option to not save afterpulse truth info. If that is merged first, this will have a conflict again.

[pietrodigangi]

hi guys, how about this PR? Its' sitting here since months.
Is there any action required or should we close it?
@pdeperio @mcfatelin @jhowl01

[JosephJHowlett]

@pietrodigangi @pdeperio @mcfatelin

My memory is that this was working (conflicts resolved) as of last message (March) but was for some reason (forgetfulness?) never merged. I think if the full-chain processing has survived without it this long, maybe it isn't necessary. We can keep the branch alive and close the PR?