AJG.Code review#11
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Sveta's Edits
Christina-Straham
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Christina-Straham
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When I ran your code, I got the error "Error: object 'DNAme' not found." I would remove the install.package codes from the markdown or the reviewer will not be able to run the code!
FYI, I think you started working on Svetlana's version when it was merged to the main.
| colnames(idh1_idh2) <- c("IDH") | ||
| compiled <- cbind(tet, idh1_idh2) | ||
| View(compiled) # scrolled through and identified the patient/sample number that had the mutations in both TET2 and IDH | ||
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This is great! Wish I could have done this!
kate-t-48
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kate-t-48
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I think regarding your questions; the final TET2/IDH comparisons are looking at some Bayesian analyses to see which co-founders have the highest impact on methylation status. I believe the probe numbers are the number of statistically significant data points where the model (ie design 1/2/3) explains the methylation difference. Maybe?!
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