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Create XnatResourceGather#521

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duettwe wants to merge 6 commits intomainfrom
duettwe-resource-gather
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Create XnatResourceGather#521
duettwe wants to merge 6 commits intomainfrom
duettwe-resource-gather

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@duettwe duettwe commented Aug 5, 2025

Example here:

(dax) (base) [duettwe@landman01 ~]$ python XnatResourceGather.py -p GenFac_HWZ --sub 142866 --sess 142866
Project: GenFac_HWZ
Subject: 142866
Session: 142866
Assessors:
  - assessor_label: GenFac_HWZ-x-142866-x-142866-x-acapulco_v23-x-45273a03
    inputs:
      - input_1: ['scans', '201']
  - assessor_label: GenFac_HWZ-x-142866-x-142866-x-biscuit_externalUpload
    inputs: NO INPUTS FOUND
  - assessor_label: GenFac_HWZ-x-142866-x-142866-x-cat12_ss2p0_v2-x-88ab1033-be70-4f51-9370-86ee94f4b457
    inputs:
      - input_1: ['scans', '201']
  - assessor_label: GenFac_HWZ-x-142866-x-142866-x-combined-GF-WM_v1-x-70801a12
    inputs:
      - input_1: ['assessors', 'GenFac_HWZ-x-142866-x-142866-x-fmri-GF-WM1_v1-x-0b4272bf']
      - input_2: ['assessors', 'GenFac_HWZ-x-142866-x-142866-x-fmri-GF-WM2_v1-x-debd898e']
  - assessor_label: GenFac_HWZ-x-142866-x-142866-x-connectome_special_externalUpload
    inputs: NO INPUTS FOUND
  - assessor_label: GenFac_HWZ-x-142866-x-142866-x-dtiQA_triple_v7-x-0fee18f9-7d81-4f90-98c3-98155bf77662
    inputs:
      - input_1: ['scans', '1201']
      - input_2: ['scans', '1301']
      - input_3: ['scans', '1101']
  - assessor_label: GenFac_HWZ-x-142866-x-142866-x-eve3reg_externalUpload
    inputs: NO INPUTS FOUND
  - assessor_label: GenFac_HWZ-x-142866-x-142866-x-examcard-to-txt_v1-x-1af0c257
    inputs:
      - input_1: ['scans', '0']
  - assessor_label: GenFac_HWZ-x-142866-x-142866-x-fmri-GF-WM1_v1-x-0b4272bf
    inputs:
      - input_1: ['scans', '501']
      - input_2: ['assessors', 'GenFac_HWZ-x-142866-x-142866-x-fmriprep_v24-x-2be42251']
  - assessor_label: GenFac_HWZ-x-142866-x-142866-x-fmri-GF-WM2_v1-x-debd898e
    inputs:
      - input_1: ['scans', '601']
      - input_2: ['assessors', 'GenFac_HWZ-x-142866-x-142866-x-fmriprep_v24-x-c2a30ad4']
  - assessor_label: GenFac_HWZ-x-142866-x-142866-x-fmriprep_v21-x-00bd10ea
    inputs:
      - input_1: ['scans', '401']
      - input_2: ['scans', '201']
  - assessor_label: GenFac_HWZ-x-142866-x-142866-x-fmriprep_v21-x-24437275
    inputs:
      - input_1: ['scans', '301']
      - input_2: ['scans', '201']
  - assessor_label: GenFac_HWZ-x-142866-x-142866-x-fmriprep_v24-x-1ef5085f
    inputs:
      - input_1: ['scans', '201']
      - input_2: ['scans', '401']
      - input_3: ['assessors', 'GenFac_HWZ-x-142866-x-142866-x-freesurfer741_v2-x-afbc3e1c']
      - input_4: ['scans', '1001']
  - assessor_label: GenFac_HWZ-x-142866-x-142866-x-fmriprep_v24-x-2be42251
    inputs:
      - input_1: ['scans', '201']
      - input_2: ['scans', '401']
      - input_3: ['assessors', 'GenFac_HWZ-x-142866-x-142866-x-freesurfer741_v2-x-afbc3e1c']
      - input_4: ['scans', '501']
  - assessor_label: GenFac_HWZ-x-142866-x-142866-x-fmriprep_v24-x-6d934b09
    inputs:
      - input_1: ['scans', '201']
      - input_2: ['scans', '401']
      - input_3: ['assessors', 'GenFac_HWZ-x-142866-x-142866-x-freesurfer741_v2-x-afbc3e1c']
      - input_4: ['scans', '901']
  - assessor_label: GenFac_HWZ-x-142866-x-142866-x-fmriprep_v24-x-bd36c0ec
    inputs:
      - input_1: ['scans', '201']
      - input_2: ['scans', '401']
      - input_3: ['assessors', 'GenFac_HWZ-x-142866-x-142866-x-freesurfer741_v2-x-afbc3e1c']
      - input_4: ['scans', '801']
  - assessor_label: GenFac_HWZ-x-142866-x-142866-x-fmriprep_v24-x-c2a30ad4
    inputs:
      - input_1: ['scans', '201']
      - input_2: ['scans', '401']
      - input_3: ['assessors', 'GenFac_HWZ-x-142866-x-142866-x-freesurfer741_v2-x-afbc3e1c']
      - input_4: ['scans', '601']
  - assessor_label: GenFac_HWZ-x-142866-x-142866-x-fmriprep_v24-x-e47b1223
    inputs:
      - input_1: ['scans', '301']
      - input_2: ['scans', '401']
      - input_3: ['assessors', 'GenFac_HWZ-x-142866-x-142866-x-freesurfer741_v2-x-afbc3e1c']
      - input_4: ['scans', '201']
  - assessor_label: GenFac_HWZ-x-142866-x-142866-x-fmriqa_v4-x-06295364-05d1-416b-8754-acc1c43698e1
    inputs:
      - input_1: ['assessors', 'GenFac_HWZ-x-142866-x-142866-x-slant_gpu_v1-x-25217663-9336-46bd-8c8b-cd3f281d5dc3']
      - input_2: ['scans', '201']
      - input_3: ['scans', '301']
  - assessor_label: GenFac_HWZ-x-142866-x-142866-x-fmriqa_v4-x-1d80aabe-8cbf-45d0-a89d-e9518cdf9748
    inputs:
      - input_1: ['assessors', 'GenFac_HWZ-x-142866-x-142866-x-slant_gpu_v1-x-25217663-9336-46bd-8c8b-cd3f281d5dc3']
      - input_2: ['scans', '201']
      - input_3: ['scans', '601']
  - assessor_label: GenFac_HWZ-x-142866-x-142866-x-fmriqa_v4-x-5248e139-cd93-473a-b0a5-7adf08131ed0
    inputs:
      - input_1: ['assessors', 'GenFac_HWZ-x-142866-x-142866-x-slant_gpu_v1-x-25217663-9336-46bd-8c8b-cd3f281d5dc3']
      - input_2: ['scans', '201']
      - input_3: ['scans', '501']
  - assessor_label: GenFac_HWZ-x-142866-x-142866-x-fmriqa_v4-x-5287f221-ddc6-4c83-b9d3-4283e8d0385f
    inputs:
      - input_1: ['assessors', 'GenFac_HWZ-x-142866-x-142866-x-slant_gpu_v1-x-25217663-9336-46bd-8c8b-cd3f281d5dc3']
      - input_2: ['scans', '201']
      - input_3: ['scans', '401']
  - assessor_label: GenFac_HWZ-x-142866-x-142866-x-fmriqa_v4-x-5e16d27d-c661-4d70-ab70-bcef4c75f13d
    inputs:
      - input_1: ['assessors', 'GenFac_HWZ-x-142866-x-142866-x-slant_gpu_v1-x-25217663-9336-46bd-8c8b-cd3f281d5dc3']
      - input_2: ['scans', '201']
      - input_3: ['scans', '1001']
  - assessor_label: GenFac_HWZ-x-142866-x-142866-x-fmriqa_v4-x-beb9a740-c857-41e2-9ce1-a6792fa607d8
    inputs:
      - input_1: ['assessors', 'GenFac_HWZ-x-142866-x-142866-x-slant_gpu_v1-x-25217663-9336-46bd-8c8b-cd3f281d5dc3']
      - input_2: ['scans', '201']
      - input_3: ['scans', '801']
  - assessor_label: GenFac_HWZ-x-142866-x-142866-x-fmriqa_v4-x-c0b7b6da-4f9d-4733-972e-99293334b433
    inputs:
      - input_1: ['assessors', 'GenFac_HWZ-x-142866-x-142866-x-slant_gpu_v1-x-25217663-9336-46bd-8c8b-cd3f281d5dc3']
      - input_2: ['scans', '201']
      - input_3: ['scans', '901']
  - assessor_label: GenFac_HWZ-x-142866-x-142866-x-free_water_externalUpload
    inputs: NO INPUTS FOUND
  - assessor_label: GenFac_HWZ-x-142866-x-142866-x-freesurfer741_v2-x-afbc3e1c
    inputs:
      - input_1: ['scans', '201']
  - assessor_label: GenFac_HWZ-x-142866-x-142866-x-freesurfer_dev_v2-x-6e44d640-f520-49f3-9dd2-013c11c4d92b
    inputs:
      - input_1: ['scans', '201']
  - assessor_label: GenFac_HWZ-x-142866-x-142866-x-gf-edat-Oddball_v3-x-ca2fd765-33f5-43cf-81ec-f97987702ace
    inputs:
      - input_1: ['scans', '901']
  - assessor_label: GenFac_HWZ-x-142866-x-142866-x-gf-edat-Oddball_v3-x-faf79c0a-8506-49f3-a3c2-5e70d6b55565
    inputs:
      - input_1: ['scans', '801']
  - assessor_label: GenFac_HWZ-x-142866-x-142866-x-gf-edat-SPT_v3-x-8d791115-4676-40a4-a3b8-130008c15a12
    inputs:
      - input_1: ['scans', '1001']
  - assessor_label: GenFac_HWZ-x-142866-x-142866-x-gf-edat-WM_v3-x-b357aabd-5b0a-41dd-8976-17579939a053
    inputs:
      - input_1: ['scans', '601']
  - assessor_label: GenFac_HWZ-x-142866-x-142866-x-gf-edat-WM_v3-x-e013b800-e99c-4c62-a077-a197424177c7
    inputs:
      - input_1: ['scans', '501']
  - assessor_label: GenFac_HWZ-x-142866-x-142866-x-gf-fmri-Oddball_v1-x-5c9137cf-8358-4aa0-9bad-b13cb8fc477a
    inputs:
      - input_1: ['assessors', 'GenFac_HWZ-x-142866-x-142866-x-slant_gpu_v1-x-25217663-9336-46bd-8c8b-cd3f281d5dc3']
      - input_2: ['scans', '401']
      - input_3: ['assessors', 'GenFac_HWZ-x-142866-x-142866-x-gf-edat-Oddball_v3-x-ca2fd765-33f5-43cf-81ec-f97987702ace']
      - input_4: ['assessors', 'GenFac_HWZ-x-142866-x-142866-x-cat12_ss2p0_v2-x-88ab1033-be70-4f51-9370-86ee94f4b457']
      - input_5: ['scans', '901']
  - assessor_label: GenFac_HWZ-x-142866-x-142866-x-gf-fmri-Oddball_v1-x-b5d90ace-1c2a-42a6-9b7d-07c4dd363809
    inputs:
      - input_1: ['assessors', 'GenFac_HWZ-x-142866-x-142866-x-slant_gpu_v1-x-25217663-9336-46bd-8c8b-cd3f281d5dc3']
      - input_2: ['scans', '401']
      - input_3: ['assessors', 'GenFac_HWZ-x-142866-x-142866-x-gf-edat-Oddball_v3-x-faf79c0a-8506-49f3-a3c2-5e70d6b55565']
      - input_4: ['assessors', 'GenFac_HWZ-x-142866-x-142866-x-cat12_ss2p0_v2-x-88ab1033-be70-4f51-9370-86ee94f4b457']
      - input_5: ['scans', '801']
  - assessor_label: GenFac_HWZ-x-142866-x-142866-x-gf-fmri-SPT_v1-x-9d69c167-7c8f-4377-a493-09140f746460
    inputs:
      - input_1: ['assessors', 'GenFac_HWZ-x-142866-x-142866-x-slant_gpu_v1-x-25217663-9336-46bd-8c8b-cd3f281d5dc3']
      - input_2: ['scans', '401']
      - input_3: ['assessors', 'GenFac_HWZ-x-142866-x-142866-x-gf-edat-SPT_v3-x-8d791115-4676-40a4-a3b8-130008c15a12']
      - input_4: ['assessors', 'GenFac_HWZ-x-142866-x-142866-x-cat12_ss2p0_v2-x-88ab1033-be70-4f51-9370-86ee94f4b457']
      - input_5: ['scans', '1001']
  - assessor_label: GenFac_HWZ-x-142866-x-142866-x-gf-fmri-WM_v1-x-401883d9-7106-4fd6-beae-9ae5cf845957
    inputs:
      - input_1: ['assessors', 'GenFac_HWZ-x-142866-x-142866-x-slant_gpu_v1-x-25217663-9336-46bd-8c8b-cd3f281d5dc3']
      - input_2: ['scans', '401']
      - input_3: ['assessors', 'GenFac_HWZ-x-142866-x-142866-x-gf-edat-WM_v3-x-e013b800-e99c-4c62-a077-a197424177c7']
      - input_4: ['assessors', 'GenFac_HWZ-x-142866-x-142866-x-cat12_ss2p0_v2-x-88ab1033-be70-4f51-9370-86ee94f4b457']
      - input_5: ['scans', '501']
  - assessor_label: GenFac_HWZ-x-142866-x-142866-x-gf-fmri-WM_v1-x-b8e0936f-9d96-447c-b6ab-81c0caf61e4d
    inputs:
      - input_1: ['assessors', 'GenFac_HWZ-x-142866-x-142866-x-slant_gpu_v1-x-25217663-9336-46bd-8c8b-cd3f281d5dc3']
      - input_2: ['scans', '401']
      - input_3: ['assessors', 'GenFac_HWZ-x-142866-x-142866-x-gf-edat-WM_v3-x-b357aabd-5b0a-41dd-8976-17579939a053']
      - input_4: ['assessors', 'GenFac_HWZ-x-142866-x-142866-x-cat12_ss2p0_v2-x-88ab1033-be70-4f51-9370-86ee94f4b457']
      - input_5: ['scans', '601']
  - assessor_label: GenFac_HWZ-x-142866-x-142866-x-hipsthomas_v2-x-a465090f
    inputs:
      - input_1: ['scans', '201']
  - assessor_label: GenFac_HWZ-x-142866-x-142866-x-macruise_externalUpload
    inputs: NO INPUTS FOUND
  - assessor_label: GenFac_HWZ-x-142866-x-142866-x-mriqc_json_v22-x-2a9160f5
    inputs:
      - input_1: ['scans', '201']
  - assessor_label: GenFac_HWZ-x-142866-x-142866-x-mriqc_v22-x-e38cd2b4
    inputs:
      - input_1: ['scans', '201']
  - assessor_label: GenFac_HWZ-x-142866-x-142866-x-noddi_externalUpload
    inputs: NO INPUTS FOUND
  - assessor_label: GenFac_HWZ-x-142866-x-142866-x-reface_v1-x-3458901f-bfa1-4801-8938-1fd802869443
    inputs:
      - input_1: ['scans', '201']
  - assessor_label: GenFac_HWZ-x-142866-x-142866-x-rois-GF-WM_v2-x-5f9b9764
    inputs:
      - input_1: ['assessors', 'GenFac_HWZ-x-142866-x-142866-x-combined-GF-WM_v1-x-70801a12']
  - assessor_label: GenFac_HWZ-x-142866-x-142866-x-slant_gpu_v1-x-25217663-9336-46bd-8c8b-cd3f281d5dc3
    inputs:
      - input_1: ['scans', '201']
  - assessor_label: GenFac_HWZ-x-142866-x-142866-x-slant_ticv_externalUpload
    inputs: NO INPUTS FOUND
  - assessor_label: GenFac_HWZ-x-142866-x-142866-x-tbss-enigma_v1-x-0444fad2
    inputs:
      - input_1: ['assessors', 'GenFac_HWZ-x-142866-x-142866-x-dtiQA_triple_v7-x-0fee18f9-7d81-4f90-98c3-98155bf77662']
  - assessor_label: GenFac_HWZ-x-142866-x-142866-x-thomas_v2-x-9811f7c1-c45e-4dbf-8b0b-08568c9a3c95
    inputs:
      - input_1: ['scans', '201']
  - assessor_label: GenFac_HWZ-x-142866-x-142866-x-tractseg_externalUpload
    inputs: NO INPUTS FOUND
  - assessor_label: GenFac_HWZ-x-142866-x-142866-x-xcpd-genfac5_v0-x-b6e2bca1
    inputs:
      - input_1: ['assessors', 'GenFac_HWZ-x-142866-x-142866-x-fmriprep_v24-x-e47b1223']
      - input_2: ['scans', '301']

@duettwe duettwe requested a review from baxpr August 5, 2025 16:46
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baxpr commented Aug 5, 2025

Nice! Couple of thoughts:

  • Consistent arg format e.g. --proj / --subj / --sess
  • Remove .py extension to be consistent with other tools
  • Use with construction to query xnat for assessor list so taht the connection gets closed

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baxpr commented Aug 5, 2025

  • Look up the scan type so we see e.g. 201, T1_TFE_3D instead of just the scan number

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baxpr commented Aug 5, 2025

  • Instead of labels like input_1 can we get the actual label like scan_fmri or assr_fmriprep etc?

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baxpr commented Aug 5, 2025

  • subtree for each assessor. E.g. I want to be able to follow GenFac_HWZ-x-142866-x-142866-x-rois-GF-WM_v2-x-5f9b9764 all the way down to the original scan inputs. Along these lines, maybe take a single assessor type or label as the input?

@duettwe duettwe closed this Aug 5, 2025
@duettwe duettwe reopened this Aug 5, 2025
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duettwe commented Aug 5, 2025

Whoops, didn't mean to close this.

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duettwe commented Aug 5, 2025

  • subtree for each assessor. E.g. I want to be able to follow GenFac_HWZ-x-142866-x-142866-x-rois-GF-WM_v2-x-5f9b9764 all the way down to the original scan inputs. Along these lines, maybe take a single assessor type or label as the input?

Are you thinking this will be used to search by single assessors or for entire projects or both?

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baxpr commented Aug 5, 2025

Whichever. Getting the full tree for a single assessor is the main point though.

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duettwe commented Aug 5, 2025

  • DONE

    • Consistent arg format e.g. --proj / --subj / --sess
    • Remove .py extension to be consistent with other tools
    • Use with construction to query xnat for assessor list so that the connection gets closed

  • IN PROGRESS

    • Look up the scan type so we see e.g. 201, T1_TFE_3D instead of just the scan number (This should be easy enough)
    • Instead of labels like input_1 can we get the actual label like scan_fmri or assr_fmriprep etc (MAYBE WORKING; Haven't fully tested)
    • subtree for each assessor. E.g. I want to be able to follow GenFac_HWZ-x-142866-x-142866-x-rois-GF-WM_v2-x-5f9b9764 all the way down to the original scan inputs. Along these lines, maybe take a single assessor type or label as the input? (Starting to look into this. The issue with this is formatting the spacing/tabbing based on where we are within the yaml)

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baxpr commented Aug 5, 2025

Random suggestion, but you could forget spacing/tabs entirely maybe if you use a python structure to store the data, e.g. dict within dict within dict, generated recursively (?) Then I bet there's a module out there that can immediately reformat that to yaml/json/whatever

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duettwe commented Aug 22, 2025

Is there a good way to add lists into dictionaries? It would need to be something like

res_list = {project: {subject: {session: {assessor: {input_list}}}}}

# Then there'd also need to be a way to nest the input assessors within the {assessor: {input_list}}

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duettwe commented Aug 22, 2025

Or a better way to have a running dictionary where you could append inputs to it?
res_list[project][subject][session][assessor][inputs] = input

@duettwe duettwe changed the title Create XnatResourceGather.py Create XnatResourceGather Sep 2, 2025
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duettwe commented Sep 2, 2025

This works, but is ugly output.

What I don't have is assessor inputs that are inputs for assessors, aka it only goes this far:

assessor
     scan input
     assessor input (THIS ONE DOESN'T LIST INPUTS)
     etc.

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baxpr commented Sep 2, 2025

Just used this the other day, https://bug.xnat.vanderbilt.edu/bugzilla/show_bug.cgi?id=3423#c5 :)

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duettwe commented Sep 2, 2025

This is what I'm currently getting.

(dax) wilduett@DSPC02C802LM0XV ~ % ./XnatResourceGather --proj GenFac_HWZ --subj 142866 --sess 142866
GenFac_HWZ:
  '142866':
    '142866':
      Assessor:
        GenFac_HWZ-x-142866-x-142866-x-acapulco_v23-x-45273a03:
          scans_201: cs_T1W_3D_TFE_32 channel
        GenFac_HWZ-x-142866-x-142866-x-biscuit_externalUpload: {}
        GenFac_HWZ-x-142866-x-142866-x-cat12_ss2p0_v2-x-88ab1033-be70-4f51-9370-86ee94f4b457:
          scans_201: cs_T1W_3D_TFE_32 channel
        GenFac_HWZ-x-142866-x-142866-x-combined-GF-WM_v1-x-70801a12:
          assessors_GenFac_HWZ-x-142866-x-142866-x-fmri-GF-WM1_v1-x-0b4272bf: GenFac_HWZ-x-142866-x-142866-x-fmri-GF-WM1_v1-x-0b4272bf
          assessors_GenFac_HWZ-x-142866-x-142866-x-fmri-GF-WM2_v1-x-debd898e: GenFac_HWZ-x-142866-x-142866-x-fmri-GF-WM2_v1-x-debd898e
        GenFac_HWZ-x-142866-x-142866-x-connectome_special_externalUpload: {}
        GenFac_HWZ-x-142866-x-142866-x-dtiQA_triple_v7-x-0fee18f9-7d81-4f90-98c3-98155bf77662:
          scans_1101: dti_2min_b1000app_fov140
          scans_1201: dti_2min_b1000apa_fov140
          scans_1301: dti_2min_b2000app_fov140
        GenFac_HWZ-x-142866-x-142866-x-eve3reg_externalUpload: {}
        GenFac_HWZ-x-142866-x-142866-x-examcard-to-txt_v1-x-1af0c257:
          scans_0: unknown
        GenFac_HWZ-x-142866-x-142866-x-fmri-GF-WM1_v1-x-0b4272bf:
          assessors_GenFac_HWZ-x-142866-x-142866-x-fmriprep_v24-x-2be42251: GenFac_HWZ-x-142866-x-142866-x-fmriprep_v24-x-2be42251
          scans_501: wm1APA_FMRI_MB3_2_5mm_1300
        GenFac_HWZ-x-142866-x-142866-x-fmri-GF-WM2_v1-x-debd898e:
          assessors_GenFac_HWZ-x-142866-x-142866-x-fmriprep_v24-x-c2a30ad4: GenFac_HWZ-x-142866-x-142866-x-fmriprep_v24-x-c2a30ad4
          scans_601: wm2APA_FMRI_MB3_2_5mm_1300
        GenFac_HWZ-x-142866-x-142866-x-fmriprep_v21-x-00bd10ea:
          scans_201: cs_T1W_3D_TFE_32 channel
          scans_401: rest2APP_FMRI_MB3_2_5mm_1300
        GenFac_HWZ-x-142866-x-142866-x-fmriprep_v21-x-24437275:
          scans_201: cs_T1W_3D_TFE_32 channel
          scans_301: rest1APA_FMRI_MB3_2_5mm_1300
        GenFac_HWZ-x-142866-x-142866-x-fmriprep_v24-x-1ef5085f:
          assessors_GenFac_HWZ-x-142866-x-142866-x-freesurfer741_v2-x-afbc3e1c: GenFac_HWZ-x-142866-x-142866-x-freesurfer741_v2-x-afbc3e1c
          scans_1001: spt1APA_FMRI_MB3_2_5mm_1300
          scans_201: cs_T1W_3D_TFE_32 channel
          scans_401: rest2APP_FMRI_MB3_2_5mm_1300
        GenFac_HWZ-x-142866-x-142866-x-fmriprep_v24-x-2be42251:
          assessors_GenFac_HWZ-x-142866-x-142866-x-freesurfer741_v2-x-afbc3e1c: GenFac_HWZ-x-142866-x-142866-x-freesurfer741_v2-x-afbc3e1c
          scans_201: cs_T1W_3D_TFE_32 channel
          scans_401: rest2APP_FMRI_MB3_2_5mm_1300
          scans_501: wm1APA_FMRI_MB3_2_5mm_1300
        GenFac_HWZ-x-142866-x-142866-x-fmriprep_v24-x-6d934b09:
          assessors_GenFac_HWZ-x-142866-x-142866-x-freesurfer741_v2-x-afbc3e1c: GenFac_HWZ-x-142866-x-142866-x-freesurfer741_v2-x-afbc3e1c
          scans_201: cs_T1W_3D_TFE_32 channel
          scans_401: rest2APP_FMRI_MB3_2_5mm_1300
          scans_901: oddball2APA_FMRI_MB3_2_5mm_1300
        GenFac_HWZ-x-142866-x-142866-x-fmriprep_v24-x-bd36c0ec:
          assessors_GenFac_HWZ-x-142866-x-142866-x-freesurfer741_v2-x-afbc3e1c: GenFac_HWZ-x-142866-x-142866-x-freesurfer741_v2-x-afbc3e1c
          scans_201: cs_T1W_3D_TFE_32 channel
          scans_401: rest2APP_FMRI_MB3_2_5mm_1300
          scans_801: oddball1APA_FMRI_MB3_2_5mm_1300
        GenFac_HWZ-x-142866-x-142866-x-fmriprep_v24-x-c2a30ad4:
          assessors_GenFac_HWZ-x-142866-x-142866-x-freesurfer741_v2-x-afbc3e1c: GenFac_HWZ-x-142866-x-142866-x-freesurfer741_v2-x-afbc3e1c
          scans_201: cs_T1W_3D_TFE_32 channel
          scans_401: rest2APP_FMRI_MB3_2_5mm_1300
          scans_601: wm2APA_FMRI_MB3_2_5mm_1300
        GenFac_HWZ-x-142866-x-142866-x-fmriprep_v24-x-e47b1223:
          assessors_GenFac_HWZ-x-142866-x-142866-x-freesurfer741_v2-x-afbc3e1c: GenFac_HWZ-x-142866-x-142866-x-freesurfer741_v2-x-afbc3e1c
          scans_201: cs_T1W_3D_TFE_32 channel
          scans_301: rest1APA_FMRI_MB3_2_5mm_1300
          scans_401: rest2APP_FMRI_MB3_2_5mm_1300
        GenFac_HWZ-x-142866-x-142866-x-fmriqa_v4-x-06295364-05d1-416b-8754-acc1c43698e1:
          assessors_GenFac_HWZ-x-142866-x-142866-x-slant_gpu_v1-x-25217663-9336-46bd-8c8b-cd3f281d5dc3: GenFac_HWZ-x-142866-x-142866-x-slant_gpu_v1-x-25217663-9336-46bd-8c8b-cd3f281d5dc3
          scans_201: cs_T1W_3D_TFE_32 channel
          scans_301: rest1APA_FMRI_MB3_2_5mm_1300
        GenFac_HWZ-x-142866-x-142866-x-fmriqa_v4-x-1d80aabe-8cbf-45d0-a89d-e9518cdf9748:
          assessors_GenFac_HWZ-x-142866-x-142866-x-slant_gpu_v1-x-25217663-9336-46bd-8c8b-cd3f281d5dc3: GenFac_HWZ-x-142866-x-142866-x-slant_gpu_v1-x-25217663-9336-46bd-8c8b-cd3f281d5dc3
          scans_201: cs_T1W_3D_TFE_32 channel
          scans_601: wm2APA_FMRI_MB3_2_5mm_1300
        GenFac_HWZ-x-142866-x-142866-x-fmriqa_v4-x-5248e139-cd93-473a-b0a5-7adf08131ed0:
          assessors_GenFac_HWZ-x-142866-x-142866-x-slant_gpu_v1-x-25217663-9336-46bd-8c8b-cd3f281d5dc3: GenFac_HWZ-x-142866-x-142866-x-slant_gpu_v1-x-25217663-9336-46bd-8c8b-cd3f281d5dc3
          scans_201: cs_T1W_3D_TFE_32 channel
          scans_501: wm1APA_FMRI_MB3_2_5mm_1300
        GenFac_HWZ-x-142866-x-142866-x-fmriqa_v4-x-5287f221-ddc6-4c83-b9d3-4283e8d0385f:
          assessors_GenFac_HWZ-x-142866-x-142866-x-slant_gpu_v1-x-25217663-9336-46bd-8c8b-cd3f281d5dc3: GenFac_HWZ-x-142866-x-142866-x-slant_gpu_v1-x-25217663-9336-46bd-8c8b-cd3f281d5dc3
          scans_201: cs_T1W_3D_TFE_32 channel
          scans_401: rest2APP_FMRI_MB3_2_5mm_1300
        GenFac_HWZ-x-142866-x-142866-x-fmriqa_v4-x-5e16d27d-c661-4d70-ab70-bcef4c75f13d:
          assessors_GenFac_HWZ-x-142866-x-142866-x-slant_gpu_v1-x-25217663-9336-46bd-8c8b-cd3f281d5dc3: GenFac_HWZ-x-142866-x-142866-x-slant_gpu_v1-x-25217663-9336-46bd-8c8b-cd3f281d5dc3
          scans_1001: spt1APA_FMRI_MB3_2_5mm_1300
          scans_201: cs_T1W_3D_TFE_32 channel
        GenFac_HWZ-x-142866-x-142866-x-fmriqa_v4-x-beb9a740-c857-41e2-9ce1-a6792fa607d8:
          assessors_GenFac_HWZ-x-142866-x-142866-x-slant_gpu_v1-x-25217663-9336-46bd-8c8b-cd3f281d5dc3: GenFac_HWZ-x-142866-x-142866-x-slant_gpu_v1-x-25217663-9336-46bd-8c8b-cd3f281d5dc3
          scans_201: cs_T1W_3D_TFE_32 channel
          scans_801: oddball1APA_FMRI_MB3_2_5mm_1300
        GenFac_HWZ-x-142866-x-142866-x-fmriqa_v4-x-c0b7b6da-4f9d-4733-972e-99293334b433:
          assessors_GenFac_HWZ-x-142866-x-142866-x-slant_gpu_v1-x-25217663-9336-46bd-8c8b-cd3f281d5dc3: GenFac_HWZ-x-142866-x-142866-x-slant_gpu_v1-x-25217663-9336-46bd-8c8b-cd3f281d5dc3
          scans_201: cs_T1W_3D_TFE_32 channel
          scans_901: oddball2APA_FMRI_MB3_2_5mm_1300
        GenFac_HWZ-x-142866-x-142866-x-free_water_externalUpload: {}
        GenFac_HWZ-x-142866-x-142866-x-freesurfer741-edits_v2-x-e3f6f70e:
          assessors_GenFac_HWZ-x-142866-x-142866-x-freesurfer741_v2-x-afbc3e1c: GenFac_HWZ-x-142866-x-142866-x-freesurfer741_v2-x-afbc3e1c
          scans_201: cs_T1W_3D_TFE_32 channel
        GenFac_HWZ-x-142866-x-142866-x-freesurfer741_v2-x-afbc3e1c:
          scans_201: cs_T1W_3D_TFE_32 channel
        GenFac_HWZ-x-142866-x-142866-x-freesurfer_dev_v2-x-6e44d640-f520-49f3-9dd2-013c11c4d92b:
          scans_201: cs_T1W_3D_TFE_32 channel
        GenFac_HWZ-x-142866-x-142866-x-gf-edat-Oddball_v3-x-ca2fd765-33f5-43cf-81ec-f97987702ace:
          scans_901: oddball2APA_FMRI_MB3_2_5mm_1300
        GenFac_HWZ-x-142866-x-142866-x-gf-edat-Oddball_v3-x-faf79c0a-8506-49f3-a3c2-5e70d6b55565:
          scans_801: oddball1APA_FMRI_MB3_2_5mm_1300
        GenFac_HWZ-x-142866-x-142866-x-gf-edat-SPT_v3-x-8d791115-4676-40a4-a3b8-130008c15a12:
          scans_1001: spt1APA_FMRI_MB3_2_5mm_1300
        GenFac_HWZ-x-142866-x-142866-x-gf-edat-WM_v3-x-b357aabd-5b0a-41dd-8976-17579939a053:
          scans_601: wm2APA_FMRI_MB3_2_5mm_1300
        GenFac_HWZ-x-142866-x-142866-x-gf-edat-WM_v3-x-e013b800-e99c-4c62-a077-a197424177c7:
          scans_501: wm1APA_FMRI_MB3_2_5mm_1300
        GenFac_HWZ-x-142866-x-142866-x-gf-fmri-Oddball_v1-x-5c9137cf-8358-4aa0-9bad-b13cb8fc477a:
          assessors_GenFac_HWZ-x-142866-x-142866-x-cat12_ss2p0_v2-x-88ab1033-be70-4f51-9370-86ee94f4b457: GenFac_HWZ-x-142866-x-142866-x-cat12_ss2p0_v2-x-88ab1033-be70-4f51-9370-86ee94f4b457
          assessors_GenFac_HWZ-x-142866-x-142866-x-gf-edat-Oddball_v3-x-ca2fd765-33f5-43cf-81ec-f97987702ace: GenFac_HWZ-x-142866-x-142866-x-gf-edat-Oddball_v3-x-ca2fd765-33f5-43cf-81ec-f97987702ace
          assessors_GenFac_HWZ-x-142866-x-142866-x-slant_gpu_v1-x-25217663-9336-46bd-8c8b-cd3f281d5dc3: GenFac_HWZ-x-142866-x-142866-x-slant_gpu_v1-x-25217663-9336-46bd-8c8b-cd3f281d5dc3
          scans_401: rest2APP_FMRI_MB3_2_5mm_1300
          scans_901: oddball2APA_FMRI_MB3_2_5mm_1300
        GenFac_HWZ-x-142866-x-142866-x-gf-fmri-Oddball_v1-x-b5d90ace-1c2a-42a6-9b7d-07c4dd363809:
          assessors_GenFac_HWZ-x-142866-x-142866-x-cat12_ss2p0_v2-x-88ab1033-be70-4f51-9370-86ee94f4b457: GenFac_HWZ-x-142866-x-142866-x-cat12_ss2p0_v2-x-88ab1033-be70-4f51-9370-86ee94f4b457
          assessors_GenFac_HWZ-x-142866-x-142866-x-gf-edat-Oddball_v3-x-faf79c0a-8506-49f3-a3c2-5e70d6b55565: GenFac_HWZ-x-142866-x-142866-x-gf-edat-Oddball_v3-x-faf79c0a-8506-49f3-a3c2-5e70d6b55565
          assessors_GenFac_HWZ-x-142866-x-142866-x-slant_gpu_v1-x-25217663-9336-46bd-8c8b-cd3f281d5dc3: GenFac_HWZ-x-142866-x-142866-x-slant_gpu_v1-x-25217663-9336-46bd-8c8b-cd3f281d5dc3
          scans_401: rest2APP_FMRI_MB3_2_5mm_1300
          scans_801: oddball1APA_FMRI_MB3_2_5mm_1300
        GenFac_HWZ-x-142866-x-142866-x-gf-fmri-SPT_v1-x-9d69c167-7c8f-4377-a493-09140f746460:
          assessors_GenFac_HWZ-x-142866-x-142866-x-cat12_ss2p0_v2-x-88ab1033-be70-4f51-9370-86ee94f4b457: GenFac_HWZ-x-142866-x-142866-x-cat12_ss2p0_v2-x-88ab1033-be70-4f51-9370-86ee94f4b457
          assessors_GenFac_HWZ-x-142866-x-142866-x-gf-edat-SPT_v3-x-8d791115-4676-40a4-a3b8-130008c15a12: GenFac_HWZ-x-142866-x-142866-x-gf-edat-SPT_v3-x-8d791115-4676-40a4-a3b8-130008c15a12
          assessors_GenFac_HWZ-x-142866-x-142866-x-slant_gpu_v1-x-25217663-9336-46bd-8c8b-cd3f281d5dc3: GenFac_HWZ-x-142866-x-142866-x-slant_gpu_v1-x-25217663-9336-46bd-8c8b-cd3f281d5dc3
          scans_1001: spt1APA_FMRI_MB3_2_5mm_1300
          scans_401: rest2APP_FMRI_MB3_2_5mm_1300
        GenFac_HWZ-x-142866-x-142866-x-gf-fmri-WM_v1-x-401883d9-7106-4fd6-beae-9ae5cf845957:
          assessors_GenFac_HWZ-x-142866-x-142866-x-cat12_ss2p0_v2-x-88ab1033-be70-4f51-9370-86ee94f4b457: GenFac_HWZ-x-142866-x-142866-x-cat12_ss2p0_v2-x-88ab1033-be70-4f51-9370-86ee94f4b457
          assessors_GenFac_HWZ-x-142866-x-142866-x-gf-edat-WM_v3-x-e013b800-e99c-4c62-a077-a197424177c7: GenFac_HWZ-x-142866-x-142866-x-gf-edat-WM_v3-x-e013b800-e99c-4c62-a077-a197424177c7
          assessors_GenFac_HWZ-x-142866-x-142866-x-slant_gpu_v1-x-25217663-9336-46bd-8c8b-cd3f281d5dc3: GenFac_HWZ-x-142866-x-142866-x-slant_gpu_v1-x-25217663-9336-46bd-8c8b-cd3f281d5dc3
          scans_401: rest2APP_FMRI_MB3_2_5mm_1300
          scans_501: wm1APA_FMRI_MB3_2_5mm_1300
        GenFac_HWZ-x-142866-x-142866-x-gf-fmri-WM_v1-x-b8e0936f-9d96-447c-b6ab-81c0caf61e4d:
          assessors_GenFac_HWZ-x-142866-x-142866-x-cat12_ss2p0_v2-x-88ab1033-be70-4f51-9370-86ee94f4b457: GenFac_HWZ-x-142866-x-142866-x-cat12_ss2p0_v2-x-88ab1033-be70-4f51-9370-86ee94f4b457
          assessors_GenFac_HWZ-x-142866-x-142866-x-gf-edat-WM_v3-x-b357aabd-5b0a-41dd-8976-17579939a053: GenFac_HWZ-x-142866-x-142866-x-gf-edat-WM_v3-x-b357aabd-5b0a-41dd-8976-17579939a053
          assessors_GenFac_HWZ-x-142866-x-142866-x-slant_gpu_v1-x-25217663-9336-46bd-8c8b-cd3f281d5dc3: GenFac_HWZ-x-142866-x-142866-x-slant_gpu_v1-x-25217663-9336-46bd-8c8b-cd3f281d5dc3
          scans_401: rest2APP_FMRI_MB3_2_5mm_1300
          scans_601: wm2APA_FMRI_MB3_2_5mm_1300
        GenFac_HWZ-x-142866-x-142866-x-hipsthomas_v2-x-a465090f:
          scans_201: cs_T1W_3D_TFE_32 channel
        GenFac_HWZ-x-142866-x-142866-x-macruise_externalUpload: {}
        GenFac_HWZ-x-142866-x-142866-x-mriqc_json_v22-x-2a9160f5:
          scans_201: cs_T1W_3D_TFE_32 channel
        GenFac_HWZ-x-142866-x-142866-x-mriqc_v22-x-e38cd2b4:
          scans_201: cs_T1W_3D_TFE_32 channel
        GenFac_HWZ-x-142866-x-142866-x-noddi_externalUpload: {}
        GenFac_HWZ-x-142866-x-142866-x-reface_v1-x-3458901f-bfa1-4801-8938-1fd802869443:
          scans_201: cs_T1W_3D_TFE_32 channel
        GenFac_HWZ-x-142866-x-142866-x-rois-GF-WM_v2-x-5f9b9764:
          assessors_GenFac_HWZ-x-142866-x-142866-x-combined-GF-WM_v1-x-70801a12: GenFac_HWZ-x-142866-x-142866-x-combined-GF-WM_v1-x-70801a12
        GenFac_HWZ-x-142866-x-142866-x-slant_gpu_v1-x-25217663-9336-46bd-8c8b-cd3f281d5dc3:
          scans_201: cs_T1W_3D_TFE_32 channel
        GenFac_HWZ-x-142866-x-142866-x-slant_ticv_externalUpload: {}
        GenFac_HWZ-x-142866-x-142866-x-tbss-enigma_v1-x-0444fad2:
          assessors_GenFac_HWZ-x-142866-x-142866-x-dtiQA_triple_v7-x-0fee18f9-7d81-4f90-98c3-98155bf77662: GenFac_HWZ-x-142866-x-142866-x-dtiQA_triple_v7-x-0fee18f9-7d81-4f90-98c3-98155bf77662
        GenFac_HWZ-x-142866-x-142866-x-thomas_v2-x-9811f7c1-c45e-4dbf-8b0b-08568c9a3c95:
          scans_201: cs_T1W_3D_TFE_32 channel
        GenFac_HWZ-x-142866-x-142866-x-tractseg_externalUpload: {}
        GenFac_HWZ-x-142866-x-142866-x-xcpd-genfac5_v0-x-b6e2bca1:
          assessors_GenFac_HWZ-x-142866-x-142866-x-fmriprep_v24-x-e47b1223: GenFac_HWZ-x-142866-x-142866-x-fmriprep_v24-x-e47b1223
          scans_301: rest1APA_FMRI_MB3_2_5mm_1300

@baxpr
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baxpr commented Oct 20, 2025

Nice. Hoping for something like this, i.e. a complete breakdown for each assessor:

GenFac_HWZ-x-142866-x-142866-x-combined-GF-WM_v1-x-70801a12
   GenFac_HWZ-x-142866-x-142866-x-fmri-GF-WM1_v1-x-0b4272bf
      scan 501 wm1APA_FMRI_MB3_2_5mm_1300
      GenFac_HWZ-x-142866-x-142866-x-fmriprep_v24-x-2be42251
         scan 201 cs_T1W_3D_TFE_32 channel
         scan 401 rest2APP_FMRI_MB3_2_5mm_1300
         scan 501 wm1APA_FMRI_MB3_2_5mm_1300
         GenFac_HWZ-x-142866-x-142866-x-freesurfer741_v2-x-afbc3e1c
            scan 201 cs_T1W_3D_TFE_32 channel
   GenFac_HWZ-x-142866-x-142866-x-fmri-GF-WM2_v1-x-debd898e
      scan 601 wm2APA_FMRI_MB3_2_5mm_1300
      GenFac_HWZ-x-142866-x-142866-x-fmriprep_v24-x-c2a30ad4
         ...

And maybe separately, a list of all unique scans that contribute at any level?

scan 201 cs_T1W_3D_TFE_32 channel
scan 401 rest2APP_FMRI_MB3_2_5mm_1300
scan 501 wm1APA_FMRI_MB3_2_5mm_1300
scan 601 wm2APA_FMRI_MB3_2_5mm_1300

As it's extensive output, it would be nice to be able to select just a single assessor or proctype to do this with.

The --subj argument is actually redundant - just need to know the session to identify where to look.

@duettwe
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duettwe commented Oct 21, 2025

New Update - Looks like this now

        GenFac_HWZ-x-142866-x-142866-x-xcpd-genfac5_v0-x-b6e2bca1:
          GenFac_HWZ-x-142866-x-142866-x-fmriprep_v24-x-e47b1223:
            GenFac_HWZ-x-142866-x-142866-x-freesurfer741_v2-x-afbc3e1c:
              scans_201: cs_T1W_3D_TFE_32 channel
            scans_201: cs_T1W_3D_TFE_32 channel
            scans_301: rest1APA_FMRI_MB3_2_5mm_1300
            scans_401: rest2APP_FMRI_MB3_2_5mm_1300
          scans_301: rest1APA_FMRI_MB3_2_5mm_1300

You can also give it a proctype; for example fmrprep_v24

./XnatResourceGather --proj GenFac_HWZ --subj 142866 --sess 142866 --assess fmriprep_v24
GenFac_HWZ:
  '142866':
    '142866':
      Assessor:
        GenFac_HWZ-x-142866-x-142866-x-fmriprep_v24-x-1ef5085f:
          GenFac_HWZ-x-142866-x-142866-x-freesurfer741_v2-x-afbc3e1c:
            scans_201: cs_T1W_3D_TFE_32 channel
          scans_1001: spt1APA_FMRI_MB3_2_5mm_1300
          scans_201: cs_T1W_3D_TFE_32 channel
          scans_401: rest2APP_FMRI_MB3_2_5mm_1300
        GenFac_HWZ-x-142866-x-142866-x-fmriprep_v24-x-2be42251:
          GenFac_HWZ-x-142866-x-142866-x-freesurfer741_v2-x-afbc3e1c:
            scans_201: cs_T1W_3D_TFE_32 channel
          scans_201: cs_T1W_3D_TFE_32 channel
          scans_401: rest2APP_FMRI_MB3_2_5mm_1300
          scans_501: wm1APA_FMRI_MB3_2_5mm_1300
        GenFac_HWZ-x-142866-x-142866-x-fmriprep_v24-x-6d934b09:
          GenFac_HWZ-x-142866-x-142866-x-freesurfer741_v2-x-afbc3e1c:
            scans_201: cs_T1W_3D_TFE_32 channel
          scans_201: cs_T1W_3D_TFE_32 channel
          scans_401: rest2APP_FMRI_MB3_2_5mm_1300
          scans_901: oddball2APA_FMRI_MB3_2_5mm_1300
        GenFac_HWZ-x-142866-x-142866-x-fmriprep_v24-x-bd36c0ec:
          GenFac_HWZ-x-142866-x-142866-x-freesurfer741_v2-x-afbc3e1c:
            scans_201: cs_T1W_3D_TFE_32 channel
          scans_201: cs_T1W_3D_TFE_32 channel
          scans_401: rest2APP_FMRI_MB3_2_5mm_1300
          scans_801: oddball1APA_FMRI_MB3_2_5mm_1300
        GenFac_HWZ-x-142866-x-142866-x-fmriprep_v24-x-c2a30ad4:
          GenFac_HWZ-x-142866-x-142866-x-freesurfer741_v2-x-afbc3e1c:
            scans_201: cs_T1W_3D_TFE_32 channel
          scans_201: cs_T1W_3D_TFE_32 channel
          scans_401: rest2APP_FMRI_MB3_2_5mm_1300
          scans_601: wm2APA_FMRI_MB3_2_5mm_1300
        GenFac_HWZ-x-142866-x-142866-x-fmriprep_v24-x-e47b1223:
          GenFac_HWZ-x-142866-x-142866-x-freesurfer741_v2-x-afbc3e1c:
            scans_201: cs_T1W_3D_TFE_32 channel
          scans_201: cs_T1W_3D_TFE_32 channel
          scans_301: rest1APA_FMRI_MB3_2_5mm_1300
          scans_401: rest2APP_FMRI_MB3_2_5mm_1300

What's the best way to remove the subject? Is there a dax method I can use just for sessions?

@duettwe
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duettwe commented Oct 21, 2025

Here's the full output from what I've been testing on

./XnatResourceGather --proj GenFac_HWZ --subj 142866 --sess 142866
GenFac_HWZ:
  '142866':
    '142866':
      Assessor:
        GenFac_HWZ-x-142866-x-142866-x-acapulco_v23-x-45273a03:
          scans_201: cs_T1W_3D_TFE_32 channel
        GenFac_HWZ-x-142866-x-142866-x-biscuit_externalUpload: {}
        GenFac_HWZ-x-142866-x-142866-x-cat12_ss2p0_v2-x-88ab1033-be70-4f51-9370-86ee94f4b457:
          scans_201: cs_T1W_3D_TFE_32 channel
        GenFac_HWZ-x-142866-x-142866-x-combined-GF-WM_v1-x-70801a12:
          GenFac_HWZ-x-142866-x-142866-x-fmri-GF-WM1_v1-x-0b4272bf:
            GenFac_HWZ-x-142866-x-142866-x-fmriprep_v24-x-2be42251:
              GenFac_HWZ-x-142866-x-142866-x-freesurfer741_v2-x-afbc3e1c:
                scans_201: cs_T1W_3D_TFE_32 channel
              scans_201: cs_T1W_3D_TFE_32 channel
              scans_401: rest2APP_FMRI_MB3_2_5mm_1300
              scans_501: wm1APA_FMRI_MB3_2_5mm_1300
            scans_501: wm1APA_FMRI_MB3_2_5mm_1300
          GenFac_HWZ-x-142866-x-142866-x-fmri-GF-WM2_v1-x-debd898e:
            GenFac_HWZ-x-142866-x-142866-x-fmriprep_v24-x-c2a30ad4:
              GenFac_HWZ-x-142866-x-142866-x-freesurfer741_v2-x-afbc3e1c:
                scans_201: cs_T1W_3D_TFE_32 channel
              scans_201: cs_T1W_3D_TFE_32 channel
              scans_401: rest2APP_FMRI_MB3_2_5mm_1300
              scans_601: wm2APA_FMRI_MB3_2_5mm_1300
            scans_601: wm2APA_FMRI_MB3_2_5mm_1300
        GenFac_HWZ-x-142866-x-142866-x-connectome_special_externalUpload: {}
        GenFac_HWZ-x-142866-x-142866-x-dtiQA_triple_v7-x-0fee18f9-7d81-4f90-98c3-98155bf77662:
          scans_1101: dti_2min_b1000app_fov140
          scans_1201: dti_2min_b1000apa_fov140
          scans_1301: dti_2min_b2000app_fov140
        GenFac_HWZ-x-142866-x-142866-x-eve3reg_externalUpload: {}
        GenFac_HWZ-x-142866-x-142866-x-examcard-to-txt_v1-x-1af0c257:
          scans_0: unknown
        GenFac_HWZ-x-142866-x-142866-x-fmri-GF-WM1_v1-x-0b4272bf:
          GenFac_HWZ-x-142866-x-142866-x-fmriprep_v24-x-2be42251:
            GenFac_HWZ-x-142866-x-142866-x-freesurfer741_v2-x-afbc3e1c:
              scans_201: cs_T1W_3D_TFE_32 channel
            scans_201: cs_T1W_3D_TFE_32 channel
            scans_401: rest2APP_FMRI_MB3_2_5mm_1300
            scans_501: wm1APA_FMRI_MB3_2_5mm_1300
          scans_501: wm1APA_FMRI_MB3_2_5mm_1300
        GenFac_HWZ-x-142866-x-142866-x-fmri-GF-WM2_v1-x-debd898e:
          GenFac_HWZ-x-142866-x-142866-x-fmriprep_v24-x-c2a30ad4:
            GenFac_HWZ-x-142866-x-142866-x-freesurfer741_v2-x-afbc3e1c:
              scans_201: cs_T1W_3D_TFE_32 channel
            scans_201: cs_T1W_3D_TFE_32 channel
            scans_401: rest2APP_FMRI_MB3_2_5mm_1300
            scans_601: wm2APA_FMRI_MB3_2_5mm_1300
          scans_601: wm2APA_FMRI_MB3_2_5mm_1300
        GenFac_HWZ-x-142866-x-142866-x-fmriprep_v21-x-00bd10ea:
          scans_201: cs_T1W_3D_TFE_32 channel
          scans_401: rest2APP_FMRI_MB3_2_5mm_1300
        GenFac_HWZ-x-142866-x-142866-x-fmriprep_v21-x-24437275:
          scans_201: cs_T1W_3D_TFE_32 channel
          scans_301: rest1APA_FMRI_MB3_2_5mm_1300
        GenFac_HWZ-x-142866-x-142866-x-fmriprep_v24-x-1ef5085f:
          GenFac_HWZ-x-142866-x-142866-x-freesurfer741_v2-x-afbc3e1c:
            scans_201: cs_T1W_3D_TFE_32 channel
          scans_1001: spt1APA_FMRI_MB3_2_5mm_1300
          scans_201: cs_T1W_3D_TFE_32 channel
          scans_401: rest2APP_FMRI_MB3_2_5mm_1300
        GenFac_HWZ-x-142866-x-142866-x-fmriprep_v24-x-2be42251:
          GenFac_HWZ-x-142866-x-142866-x-freesurfer741_v2-x-afbc3e1c:
            scans_201: cs_T1W_3D_TFE_32 channel
          scans_201: cs_T1W_3D_TFE_32 channel
          scans_401: rest2APP_FMRI_MB3_2_5mm_1300
          scans_501: wm1APA_FMRI_MB3_2_5mm_1300
        GenFac_HWZ-x-142866-x-142866-x-fmriprep_v24-x-6d934b09:
          GenFac_HWZ-x-142866-x-142866-x-freesurfer741_v2-x-afbc3e1c:
            scans_201: cs_T1W_3D_TFE_32 channel
          scans_201: cs_T1W_3D_TFE_32 channel
          scans_401: rest2APP_FMRI_MB3_2_5mm_1300
          scans_901: oddball2APA_FMRI_MB3_2_5mm_1300
        GenFac_HWZ-x-142866-x-142866-x-fmriprep_v24-x-bd36c0ec:
          GenFac_HWZ-x-142866-x-142866-x-freesurfer741_v2-x-afbc3e1c:
            scans_201: cs_T1W_3D_TFE_32 channel
          scans_201: cs_T1W_3D_TFE_32 channel
          scans_401: rest2APP_FMRI_MB3_2_5mm_1300
          scans_801: oddball1APA_FMRI_MB3_2_5mm_1300
        GenFac_HWZ-x-142866-x-142866-x-fmriprep_v24-x-c2a30ad4:
          GenFac_HWZ-x-142866-x-142866-x-freesurfer741_v2-x-afbc3e1c:
            scans_201: cs_T1W_3D_TFE_32 channel
          scans_201: cs_T1W_3D_TFE_32 channel
          scans_401: rest2APP_FMRI_MB3_2_5mm_1300
          scans_601: wm2APA_FMRI_MB3_2_5mm_1300
        GenFac_HWZ-x-142866-x-142866-x-fmriprep_v24-x-e47b1223:
          GenFac_HWZ-x-142866-x-142866-x-freesurfer741_v2-x-afbc3e1c:
            scans_201: cs_T1W_3D_TFE_32 channel
          scans_201: cs_T1W_3D_TFE_32 channel
          scans_301: rest1APA_FMRI_MB3_2_5mm_1300
          scans_401: rest2APP_FMRI_MB3_2_5mm_1300
        GenFac_HWZ-x-142866-x-142866-x-fmriqa_v4-x-06295364-05d1-416b-8754-acc1c43698e1:
          GenFac_HWZ-x-142866-x-142866-x-slant_gpu_v1-x-25217663-9336-46bd-8c8b-cd3f281d5dc3:
            scans_201: cs_T1W_3D_TFE_32 channel
          scans_201: cs_T1W_3D_TFE_32 channel
          scans_301: rest1APA_FMRI_MB3_2_5mm_1300
        GenFac_HWZ-x-142866-x-142866-x-fmriqa_v4-x-1d80aabe-8cbf-45d0-a89d-e9518cdf9748:
          GenFac_HWZ-x-142866-x-142866-x-slant_gpu_v1-x-25217663-9336-46bd-8c8b-cd3f281d5dc3:
            scans_201: cs_T1W_3D_TFE_32 channel
          scans_201: cs_T1W_3D_TFE_32 channel
          scans_601: wm2APA_FMRI_MB3_2_5mm_1300
        GenFac_HWZ-x-142866-x-142866-x-fmriqa_v4-x-5248e139-cd93-473a-b0a5-7adf08131ed0:
          GenFac_HWZ-x-142866-x-142866-x-slant_gpu_v1-x-25217663-9336-46bd-8c8b-cd3f281d5dc3:
            scans_201: cs_T1W_3D_TFE_32 channel
          scans_201: cs_T1W_3D_TFE_32 channel
          scans_501: wm1APA_FMRI_MB3_2_5mm_1300
        GenFac_HWZ-x-142866-x-142866-x-fmriqa_v4-x-5287f221-ddc6-4c83-b9d3-4283e8d0385f:
          GenFac_HWZ-x-142866-x-142866-x-slant_gpu_v1-x-25217663-9336-46bd-8c8b-cd3f281d5dc3:
            scans_201: cs_T1W_3D_TFE_32 channel
          scans_201: cs_T1W_3D_TFE_32 channel
          scans_401: rest2APP_FMRI_MB3_2_5mm_1300
        GenFac_HWZ-x-142866-x-142866-x-fmriqa_v4-x-5e16d27d-c661-4d70-ab70-bcef4c75f13d:
          GenFac_HWZ-x-142866-x-142866-x-slant_gpu_v1-x-25217663-9336-46bd-8c8b-cd3f281d5dc3:
            scans_201: cs_T1W_3D_TFE_32 channel
          scans_1001: spt1APA_FMRI_MB3_2_5mm_1300
          scans_201: cs_T1W_3D_TFE_32 channel
        GenFac_HWZ-x-142866-x-142866-x-fmriqa_v4-x-beb9a740-c857-41e2-9ce1-a6792fa607d8:
          GenFac_HWZ-x-142866-x-142866-x-slant_gpu_v1-x-25217663-9336-46bd-8c8b-cd3f281d5dc3:
            scans_201: cs_T1W_3D_TFE_32 channel
          scans_201: cs_T1W_3D_TFE_32 channel
          scans_801: oddball1APA_FMRI_MB3_2_5mm_1300
        GenFac_HWZ-x-142866-x-142866-x-fmriqa_v4-x-c0b7b6da-4f9d-4733-972e-99293334b433:
          GenFac_HWZ-x-142866-x-142866-x-slant_gpu_v1-x-25217663-9336-46bd-8c8b-cd3f281d5dc3:
            scans_201: cs_T1W_3D_TFE_32 channel
          scans_201: cs_T1W_3D_TFE_32 channel
          scans_901: oddball2APA_FMRI_MB3_2_5mm_1300
        GenFac_HWZ-x-142866-x-142866-x-free_water_externalUpload: {}
        GenFac_HWZ-x-142866-x-142866-x-freesurfer741-edits_v2-x-e3f6f70e:
          GenFac_HWZ-x-142866-x-142866-x-freesurfer741_v2-x-afbc3e1c:
            scans_201: cs_T1W_3D_TFE_32 channel
          scans_201: cs_T1W_3D_TFE_32 channel
        GenFac_HWZ-x-142866-x-142866-x-freesurfer741_v2-x-afbc3e1c:
          scans_201: cs_T1W_3D_TFE_32 channel
        GenFac_HWZ-x-142866-x-142866-x-freesurfer_dev_v2-x-6e44d640-f520-49f3-9dd2-013c11c4d92b:
          scans_201: cs_T1W_3D_TFE_32 channel
        GenFac_HWZ-x-142866-x-142866-x-gf-edat-Oddball_v3-x-ca2fd765-33f5-43cf-81ec-f97987702ace:
          scans_901: oddball2APA_FMRI_MB3_2_5mm_1300
        GenFac_HWZ-x-142866-x-142866-x-gf-edat-Oddball_v3-x-faf79c0a-8506-49f3-a3c2-5e70d6b55565:
          scans_801: oddball1APA_FMRI_MB3_2_5mm_1300
        GenFac_HWZ-x-142866-x-142866-x-gf-edat-SPT_v3-x-8d791115-4676-40a4-a3b8-130008c15a12:
          scans_1001: spt1APA_FMRI_MB3_2_5mm_1300
        GenFac_HWZ-x-142866-x-142866-x-gf-edat-WM_v3-x-b357aabd-5b0a-41dd-8976-17579939a053:
          scans_601: wm2APA_FMRI_MB3_2_5mm_1300
        GenFac_HWZ-x-142866-x-142866-x-gf-edat-WM_v3-x-e013b800-e99c-4c62-a077-a197424177c7:
          scans_501: wm1APA_FMRI_MB3_2_5mm_1300
        GenFac_HWZ-x-142866-x-142866-x-gf-fmri-Oddball_v1-x-5c9137cf-8358-4aa0-9bad-b13cb8fc477a:
          GenFac_HWZ-x-142866-x-142866-x-cat12_ss2p0_v2-x-88ab1033-be70-4f51-9370-86ee94f4b457:
            scans_201: cs_T1W_3D_TFE_32 channel
          GenFac_HWZ-x-142866-x-142866-x-gf-edat-Oddball_v3-x-ca2fd765-33f5-43cf-81ec-f97987702ace:
            scans_901: oddball2APA_FMRI_MB3_2_5mm_1300
          GenFac_HWZ-x-142866-x-142866-x-slant_gpu_v1-x-25217663-9336-46bd-8c8b-cd3f281d5dc3:
            scans_201: cs_T1W_3D_TFE_32 channel
          scans_401: rest2APP_FMRI_MB3_2_5mm_1300
          scans_901: oddball2APA_FMRI_MB3_2_5mm_1300
        GenFac_HWZ-x-142866-x-142866-x-gf-fmri-Oddball_v1-x-b5d90ace-1c2a-42a6-9b7d-07c4dd363809:
          GenFac_HWZ-x-142866-x-142866-x-cat12_ss2p0_v2-x-88ab1033-be70-4f51-9370-86ee94f4b457:
            scans_201: cs_T1W_3D_TFE_32 channel
          GenFac_HWZ-x-142866-x-142866-x-gf-edat-Oddball_v3-x-faf79c0a-8506-49f3-a3c2-5e70d6b55565:
            scans_801: oddball1APA_FMRI_MB3_2_5mm_1300
          GenFac_HWZ-x-142866-x-142866-x-slant_gpu_v1-x-25217663-9336-46bd-8c8b-cd3f281d5dc3:
            scans_201: cs_T1W_3D_TFE_32 channel
          scans_401: rest2APP_FMRI_MB3_2_5mm_1300
          scans_801: oddball1APA_FMRI_MB3_2_5mm_1300
        GenFac_HWZ-x-142866-x-142866-x-gf-fmri-SPT_v1-x-9d69c167-7c8f-4377-a493-09140f746460:
          GenFac_HWZ-x-142866-x-142866-x-cat12_ss2p0_v2-x-88ab1033-be70-4f51-9370-86ee94f4b457:
            scans_201: cs_T1W_3D_TFE_32 channel
          GenFac_HWZ-x-142866-x-142866-x-gf-edat-SPT_v3-x-8d791115-4676-40a4-a3b8-130008c15a12:
            scans_1001: spt1APA_FMRI_MB3_2_5mm_1300
          GenFac_HWZ-x-142866-x-142866-x-slant_gpu_v1-x-25217663-9336-46bd-8c8b-cd3f281d5dc3:
            scans_201: cs_T1W_3D_TFE_32 channel
          scans_1001: spt1APA_FMRI_MB3_2_5mm_1300
          scans_401: rest2APP_FMRI_MB3_2_5mm_1300
        GenFac_HWZ-x-142866-x-142866-x-gf-fmri-WM_v1-x-401883d9-7106-4fd6-beae-9ae5cf845957:
          GenFac_HWZ-x-142866-x-142866-x-cat12_ss2p0_v2-x-88ab1033-be70-4f51-9370-86ee94f4b457:
            scans_201: cs_T1W_3D_TFE_32 channel
          GenFac_HWZ-x-142866-x-142866-x-gf-edat-WM_v3-x-e013b800-e99c-4c62-a077-a197424177c7:
            scans_501: wm1APA_FMRI_MB3_2_5mm_1300
          GenFac_HWZ-x-142866-x-142866-x-slant_gpu_v1-x-25217663-9336-46bd-8c8b-cd3f281d5dc3:
            scans_201: cs_T1W_3D_TFE_32 channel
          scans_401: rest2APP_FMRI_MB3_2_5mm_1300
          scans_501: wm1APA_FMRI_MB3_2_5mm_1300
        GenFac_HWZ-x-142866-x-142866-x-gf-fmri-WM_v1-x-b8e0936f-9d96-447c-b6ab-81c0caf61e4d:
          GenFac_HWZ-x-142866-x-142866-x-cat12_ss2p0_v2-x-88ab1033-be70-4f51-9370-86ee94f4b457:
            scans_201: cs_T1W_3D_TFE_32 channel
          GenFac_HWZ-x-142866-x-142866-x-gf-edat-WM_v3-x-b357aabd-5b0a-41dd-8976-17579939a053:
            scans_601: wm2APA_FMRI_MB3_2_5mm_1300
          GenFac_HWZ-x-142866-x-142866-x-slant_gpu_v1-x-25217663-9336-46bd-8c8b-cd3f281d5dc3:
            scans_201: cs_T1W_3D_TFE_32 channel
          scans_401: rest2APP_FMRI_MB3_2_5mm_1300
          scans_601: wm2APA_FMRI_MB3_2_5mm_1300
        GenFac_HWZ-x-142866-x-142866-x-hipsthomas_v2-x-a465090f:
          scans_201: cs_T1W_3D_TFE_32 channel
        GenFac_HWZ-x-142866-x-142866-x-macruise_externalUpload: {}
        GenFac_HWZ-x-142866-x-142866-x-mriqc_json_v22-x-2a9160f5:
          scans_201: cs_T1W_3D_TFE_32 channel
        GenFac_HWZ-x-142866-x-142866-x-mriqc_v22-x-e38cd2b4:
          scans_201: cs_T1W_3D_TFE_32 channel
        GenFac_HWZ-x-142866-x-142866-x-noddi_externalUpload: {}
        GenFac_HWZ-x-142866-x-142866-x-reface_v1-x-3458901f-bfa1-4801-8938-1fd802869443:
          scans_201: cs_T1W_3D_TFE_32 channel
        GenFac_HWZ-x-142866-x-142866-x-rois-GF-WM_v2-x-5f9b9764:
          GenFac_HWZ-x-142866-x-142866-x-combined-GF-WM_v1-x-70801a12:
            GenFac_HWZ-x-142866-x-142866-x-fmri-GF-WM1_v1-x-0b4272bf:
              GenFac_HWZ-x-142866-x-142866-x-fmriprep_v24-x-2be42251:
                GenFac_HWZ-x-142866-x-142866-x-freesurfer741_v2-x-afbc3e1c:
                  scans_201: cs_T1W_3D_TFE_32 channel
                scans_201: cs_T1W_3D_TFE_32 channel
                scans_401: rest2APP_FMRI_MB3_2_5mm_1300
                scans_501: wm1APA_FMRI_MB3_2_5mm_1300
              scans_501: wm1APA_FMRI_MB3_2_5mm_1300
            GenFac_HWZ-x-142866-x-142866-x-fmri-GF-WM2_v1-x-debd898e:
              GenFac_HWZ-x-142866-x-142866-x-fmriprep_v24-x-c2a30ad4:
                GenFac_HWZ-x-142866-x-142866-x-freesurfer741_v2-x-afbc3e1c:
                  scans_201: cs_T1W_3D_TFE_32 channel
                scans_201: cs_T1W_3D_TFE_32 channel
                scans_401: rest2APP_FMRI_MB3_2_5mm_1300
                scans_601: wm2APA_FMRI_MB3_2_5mm_1300
              scans_601: wm2APA_FMRI_MB3_2_5mm_1300
        GenFac_HWZ-x-142866-x-142866-x-slant_gpu_v1-x-25217663-9336-46bd-8c8b-cd3f281d5dc3:
          scans_201: cs_T1W_3D_TFE_32 channel
        GenFac_HWZ-x-142866-x-142866-x-slant_ticv_externalUpload: {}
        GenFac_HWZ-x-142866-x-142866-x-tbss-enigma_v1-x-0444fad2:
          GenFac_HWZ-x-142866-x-142866-x-dtiQA_triple_v7-x-0fee18f9-7d81-4f90-98c3-98155bf77662:
            scans_1101: dti_2min_b1000app_fov140
            scans_1201: dti_2min_b1000apa_fov140
            scans_1301: dti_2min_b2000app_fov140
        GenFac_HWZ-x-142866-x-142866-x-tbss-enigma_v2-x-34290d50:
          GenFac_HWZ-x-142866-x-142866-x-dtiQA_triple_v7-x-0fee18f9-7d81-4f90-98c3-98155bf77662:
            scans_1101: dti_2min_b1000app_fov140
            scans_1201: dti_2min_b1000apa_fov140
            scans_1301: dti_2min_b2000app_fov140
        GenFac_HWZ-x-142866-x-142866-x-thomas_v2-x-9811f7c1-c45e-4dbf-8b0b-08568c9a3c95:
          scans_201: cs_T1W_3D_TFE_32 channel
        GenFac_HWZ-x-142866-x-142866-x-tractseg_externalUpload: {}
        GenFac_HWZ-x-142866-x-142866-x-xcpd-Sch200Tian_v0-x-de1cd89b:
          GenFac_HWZ-x-142866-x-142866-x-fmriprep_v24-x-e47b1223:
            GenFac_HWZ-x-142866-x-142866-x-freesurfer741_v2-x-afbc3e1c:
              scans_201: cs_T1W_3D_TFE_32 channel
            scans_201: cs_T1W_3D_TFE_32 channel
            scans_301: rest1APA_FMRI_MB3_2_5mm_1300
            scans_401: rest2APP_FMRI_MB3_2_5mm_1300
          scans_301: rest1APA_FMRI_MB3_2_5mm_1300
        GenFac_HWZ-x-142866-x-142866-x-xcpd-Sch400Tian_v0-x-783640de:
          GenFac_HWZ-x-142866-x-142866-x-fmriprep_v24-x-e47b1223:
            GenFac_HWZ-x-142866-x-142866-x-freesurfer741_v2-x-afbc3e1c:
              scans_201: cs_T1W_3D_TFE_32 channel
            scans_201: cs_T1W_3D_TFE_32 channel
            scans_301: rest1APA_FMRI_MB3_2_5mm_1300
            scans_401: rest2APP_FMRI_MB3_2_5mm_1300
          scans_301: rest1APA_FMRI_MB3_2_5mm_1300
        GenFac_HWZ-x-142866-x-142866-x-xcpd-genfac5_v0-x-b6e2bca1:
          GenFac_HWZ-x-142866-x-142866-x-fmriprep_v24-x-e47b1223:
            GenFac_HWZ-x-142866-x-142866-x-freesurfer741_v2-x-afbc3e1c:
              scans_201: cs_T1W_3D_TFE_32 channel
            scans_201: cs_T1W_3D_TFE_32 channel
            scans_301: rest1APA_FMRI_MB3_2_5mm_1300
            scans_401: rest2APP_FMRI_MB3_2_5mm_1300
          scans_301: rest1APA_FMRI_MB3_2_5mm_1300

I think it's hard to read, but I'll let you decide

@duettwe duettwe requested a review from bud42 November 20, 2025 14:31
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duettwe commented Nov 20, 2025

@bud42 - We're ready to merge this in the next dax update. Take a look!

https://bug.xnat.vanderbilt.edu/bugzilla/show_bug.cgi?id=3404

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@baxpr baxpr Awaiting requested review from baxpr

@bud42 bud42 Awaiting requested review from bud42

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@duettwe @baxpr