Issues

• feature: enforce PEP8 standard

  ci-cdrefactor
  UKHD-NP/proteopy#22 · Filter by author idf-io opened on Jan 5, 2026
  

• ANOVA

  essential
  Feature

  UKHD-NP/proteopy#20 · Filter by author idf-io opened on Jan 5, 2026
  

• feature/aggregate_peptide_groups?/check and warn if log transformed data

  UKHD-NP/proteopy#18 · Filter by author idf-io opened on Oct 27, 2025

• feature/pl.proteoform_scores/arg: log_x=False

  UKHD-NP/proteopy#16 · Filter by author idf-io opened on Oct 24, 2025

• Differential proteoform analysis (traditional, based on quantities)

  UKHD-NP/proteopy#15 · Filter by author idf-io opened on Oct 24, 2025

• feature/peptide_level/summarize_overlapping_peptides

  UKHD-NP/proteopy#14 · Filter by author idf-io opened on Oct 24, 2025

• intermediate level reader function: from precursor tabular file extract relevant information

  UKHD-NP/proteopy#12 · Filter by author idf-io opened on Sep 10, 2025

• per batch correlation

  UKHD-NP/proteopy#11 · Filter by author ibludau opened on Sep 9, 2025
  1

• Aesthetic: pl.peptide_intensities(), remove box around plot. Only keep axis lines

  UKHD-NP/proteopy#10 · Filter by author idf-io opened on Sep 5, 2025

• Bug correction: pl.peptide_intensities(log_transform)

  UKHD-NP/proteopy#9 · Filter by author idf-io opened on Sep 5, 2025

• Aligned peptide summarization function

  UKHD-NP/proteopy#7 · Filter by author idf-io opened on Sep 4, 2025

• Feature summary function (focus on zeros and missing values)

  UKHD-NP/proteopy#6 · Filter by author idf-io opened on Sep 4, 2025

• peptide location plot

  UKHD-NP/proteopy#4 · Filter by author idf-io opened on Sep 4, 2025

• proteoform quant

  UKHD-NP/proteopy#3 · Filter by author ibludau opened on Sep 4, 2025