Prepare BMC Oral Health submission package

[Tuminha]

Summary

• add BMC Oral Health author block, affiliations, declarations, cover letter, and submission checklist
• generate publication figures from canonical result artifacts and wire make figures to a maintained script
• render manuscript outputs through make manuscript as PDF plus DOCX and strengthen submission verification gates

Verification

• make manuscript
• make test
• make consistency
• make verify-submission
• ./venv/bin/python -m compileall -q src scripts tests
• git diff --check
• HTML parser smoke check for reports/publication_readiness_review.html

Notes

• Generated local review artifacts remain ignored: reports/manuscript_publication_repair.pdf, reports/manuscript_bmc_submission.docx, and reports/publication_readiness_review.html.
• Final portal submission still needs coauthor emails/ORCIDs, APC route, and explicit final coauthor approval of the rendered manuscript.

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ℹ️ Review info

⚙️ Run configuration

Configuration used: defaults

Review profile: CHILL

Plan: Pro

Run ID: 874ed534-5794-4f79-955c-75d891b1642e

📥 Commits

Reviewing files that changed from the base of the PR and between 5b0780f and 80a88de.

⛔ Files ignored due to path filters (4)

• figures/19_publication_performance_summary.pdf is excluded by !**/*.pdf
• figures/19_publication_performance_summary.png is excluded by !**/*.png
• figures/20_publication_sensitivity_summary.pdf is excluded by !**/*.pdf
• figures/20_publication_sensitivity_summary.png is excluded by !**/*.png

📒 Files selected for processing (12)

• .gitignore
• CITATION.cff
• MODEL_CARD.md
• Makefile
• README.md
• docs/publication/ARTICLE_DRAFT.md
• docs/publication/BMC_ORAL_HEALTH_COVER_LETTER.md
• docs/publication/BMC_SUBMISSION_CHECKLIST.md
• reports/ARTICLE_DRAFT_line_numbered.txt
• scripts/05_number_manuscript_lines.py
• scripts/06_generate_publication_figures.py
• scripts/verify_submission.py

✨ Finishing Touches

🧪 Generate unit tests (beta)

• Create PR with unit tests
• Commit unit tests in branch bmc-submission-author-figures

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