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Merged
Bearbbcjtc merged 1 commit into from
Sep 23, 2026
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publication vis and gitops #94

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202 changes: 201 additions & 1 deletion ardac2prd/portal.ardac.org/values.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -203,7 +203,7 @@
args:
- "--NotebookApp.base_url=/lw-workspace/proxy/"
- "--NotebookApp.default_url=/lab"
- "--NotebookApp.password=''" # pragma: allowlist secret

Check warning on line 206 in ardac2prd/portal.ardac.org/values.yaml

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GitHub Actions / Lint changed YAML files 

206:41 [comments] too few spaces before comment: expected 2
- "--NotebookApp.token=''"
- "--NotebookApp.shutdown_no_activity_timeout=5400"
- "--NotebookApp.quit_button=False"
Expand Down Expand Up @@ -274,7 +274,7 @@
replicaCount: 2
image:
repository: bearbbhao/ardac-portal
tag: "1_4_0"
tag: "1_5_0"
gitops:
json: |
{
Expand Down Expand Up @@ -1397,6 +1397,206 @@
],
"accessibleValidationField": "project_id"
}
},
{
"tabTitle": "Publications",
"charts": {
"project_id": {
"chartType": "count",
"title": "Projects"
},
"publication_year": {
"chartType": "bar",
"title": "Publications by Year"
},
"journal_title": {
"chartType": "fullpie",
"title": "Publications by Journal"
}
},
"filters": {
"tabs": [
{
"title": "Publication",
"searchFields": [
"article_title",
"pmid",
"doi"
],
"fields": [
"project_id",
"publication_year",
"ardac_publication_type",
"journal_title"
]
},
{
"title": "Authors",
"searchFields": [
"author_list",
"collective_name"
],
"fields": [
"first_author",
"corresponding_author",
"last_author"
]
},
{
"title": "Curation",
"fields": [
"ardac_inclusion_status",
"ardac_curation_status",
"ardac_alchepnet_relevance",
"pubmed_match_status"
]
}
]
},
"table": {
"enabled": true,
"ordered": true,
"fields": [
"publication_id",
"article_title",
"author_list",
"collective_name",
"corresponding_author",
"medline_ta",
"publication_year",
"volume",
"issue",
"pagination",
"elocation_id",
"pub_date",
"article_date",
"doi",
"pmid",
"pmcid",
"ardac_publication_type",
"ardac_inclusion_status",
"url"
],
"linkFields": [
"url"
]
},
"dropdowns": {},
"buttons": [],
"guppyConfig": {
"dataType": "publication",
"nodeCountTitle": "Publications",
"fieldMapping": [
{
"field": "project_id",
"name": "Project"
},
{
"field": "publication_id",
"name": "Publication ID"
},
{
"field": "article_title",
"name": "Title"
},
{
"field": "author_list",
"name": "Authors"
},
{
"field": "collective_name",
"name": "Group Author"
},
{
"field": "first_author",
"name": "First Author"
},
{
"field": "corresponding_author",
"name": "Corresponding Author"
},
{
"field": "last_author",
"name": "Last-listed Author"
},
{
"field": "journal_title",
"name": "Journal"
},
{
"field": "medline_ta",
"name": "Journal Abbreviation"
},
{
"field": "publication_year",
"name": "Year"
},
{
"field": "volume",
"name": "Volume"
},
{
"field": "issue",
"name": "Issue"
},
{
"field": "pagination",
"name": "Pages"
},
{
"field": "elocation_id",
"name": "Electronic Location ID"
},
{
"field": "pub_date",
"name": "Publication Date"
},
{
"field": "article_date",
"name": "Epub Date"
},
{
"field": "doi",
"name": "DOI"
},
{
"field": "pmid",
"name": "PMID"
},
{
"field": "pmcid",
"name": "PMCID"
},
{
"field": "ardac_publication_type",
"name": "Publication Type"
},
{
"field": "ardac_inclusion_status",
"name": "ARDaC Inclusion Status"
},
{
"field": "ardac_curation_status",
"name": "Curation Status"
},
{
"field": "ardac_alchepnet_relevance",
"name": "AlcHepNet Relevance"
},
{
"field": "pubmed_match_status",
"name": "PubMed Match Status"
},
{
"field": "url",
"name": "Publication Link"
}
],
"accessibleFieldCheckList": [
"project_id"
],
"accessibleValidationField": "project_id"
}
}
],
"featureFlags": {
Expand Down
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