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23f62bd
DEoptim and graDiEnt packages integration
nisrinemouhrim Nov 21, 2025
cbe27c6
global_optim_function update
nisrinemouhrim Nov 24, 2025
eedbb73
Update of global optim graphics
nisrinemouhrim Nov 24, 2025
d35e696
Fix: print of final estimated values of parameters
sbuis Nov 24, 2025
cf6ce30
format: apply styler formatting
sbuis Nov 24, 2025
9013010
Merge cf6ce30089fd3190ac2075d528d3be96f3796b31 into ecba48dc260b26a01…
sbuis Nov 24, 2025
aed85c9
Style code (GHA)
sbuis Nov 24, 2025
0cd0a4e
Merge branch 'main' into feat/integrate-global-opt-methods
sbuis Nov 26, 2025
2b030bc
Merge branch 'main' into feat/integrate-global-opt-methods
sbuis Nov 27, 2025
64c0878
Merge branch 'main' into feat/integrate-global-opt-methods
nisrinemouhrim Dec 3, 2025
aaa33b9
Code cleanup in wrap_graDiEnt
nisrinemouhrim Dec 5, 2025
48822f3
parma::cmaes package
nisrinemouhrim Dec 14, 2025
886febb
Harmonize global optim plot
nisrinemouhrim Dec 16, 2025
6bfe422
Harmonize global optimization visualizations
nisrinemouhrim Dec 17, 2025
87925fb
Merge 6bfe42237f33377c2a0088172ef652979740783c into 95afa2ec0f054098d…
sbuis Dec 17, 2025
070071a
Style code (GHA)
nisrinemouhrim Dec 17, 2025
67f34a6
parma added to Description
nisrinemouhrim Dec 17, 2025
4e66753
Merge branch 'feat/integrate-global-opt-methods' of https://github.co…
nisrinemouhrim Dec 17, 2025
fb2c030
herit problems solved
nisrinemouhrim Dec 17, 2025
165a6e6
Update wrappers and evaluations counting
nisrinemouhrim Jan 10, 2026
1eede35
Merge 165a6e67a323c94dc82434f36a50550c017a93ad into 95afa2ec0f054098d…
sbuis Jan 10, 2026
60853d9
Style code (GHA)
nisrinemouhrim Jan 10, 2026
bddd5df
Add rgenoud : global method
nisrinemouhrim Feb 27, 2026
1929a52
Merge branch 'feat/integrate-global-opt-methods' of https://github.co…
nisrinemouhrim Feb 27, 2026
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5 changes: 4 additions & 1 deletion DESCRIPTION
Original file line number Diff line number Diff line change
Expand Up @@ -36,14 +36,17 @@ Imports:
Matrix,
BayesianTools,
crayon,
DEoptim,
doParallel,
dplyr,
ggplot2,
graDiEnt,
lhs,
lifecycle,
lubridate,
methods,
nloptr,
parma,
purrr,
rlang,
rstudioapi,
Expand Down Expand Up @@ -76,4 +79,4 @@ Encoding: UTF-8
Language: en-US
LazyData: true
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.1
RoxygenNote: 7.3.3
9 changes: 9 additions & 0 deletions NAMESPACE
Original file line number Diff line number Diff line change
Expand Up @@ -14,7 +14,10 @@ export(likelihood_log_ciidn_corr)
export(plot_estimVSinit)
export(plot_valuesVSit)
export(plot_valuesVSit_2D)
export(plot_valuesVSit_2D_go)
export(plot_valuesVSit_go)
export(test_wrapper)
export(wrap_cmaes)
importFrom(BayesianTools,MAP)
importFrom(BayesianTools,applySettingsDefault)
importFrom(BayesianTools,correlationPlot)
Expand All @@ -24,6 +27,7 @@ importFrom(BayesianTools,gelmanDiagnostics)
importFrom(BayesianTools,getSample)
importFrom(BayesianTools,marginalPlot)
importFrom(BayesianTools,runMCMC)
importFrom(DEoptim,DEoptim)
importFrom(dplyr,"%>%")
importFrom(dplyr,filter)
importFrom(dplyr,select)
Expand All @@ -45,7 +49,12 @@ importFrom(ggplot2,scale_y_log10)
importFrom(ggplot2,theme)
importFrom(ggplot2,xlim)
importFrom(ggplot2,ylim)
importFrom(graDiEnt,GetAlgoParams)
importFrom(graDiEnt,optim_SQGDE)
importFrom(parma,cmaes)
importFrom(parma,cmaes.control)
importFrom(purrr,modify)
importFrom(rgenoud,genoud)
importFrom(rlang,.data)
importFrom(stats,setNames)
importFrom(tibble,tibble)
Expand Down
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