Skani version 0.3.2

[RaheelSyedAhmed]

Pull Request (PR) checklist:

• Include a description of what is in this pull request in this message.
• The dockerfile successfully builds to a test target for the user creating the PR. (i.e. docker build --tag samtools:1.15test --target test docker-builds/build-files/samtools/1.15 )
• Directory structure as name of the tool in lower case with special characters removed with a subdirectory of the version number in build-files (i.e. docker-builds/build-files/spades/3.12.0/Dockerfile)
  • (optional) All test files are located in same directory as the Dockerfile (i.e. build-files/shigatyper/2.0.1/test.sh)
• Create a simple container-specific README.md in the same directory as the Dockerfile (i.e. docker-builds/build-files/spades/3.12.0/README.md)
  • If this README is longer than 30 lines, there is an explanation as to why more detail was needed
• Dockerfile includes the recommended LABELS
• Main README.md has been updated to include the tool and/or version of the dockerfile(s) in this PR
• Program_Licenses.md contains the tool(s) used in this PR and has been updated for any missing

Updated Dockerfile and set SKANI_VER to 0.3.2. Added a /test directory and apt-get autoclean instructions. The main README.md has 0.3.2 added to the versions dropdown for skani. The program specific README.md has no syntax changes. Version 0.3.2 was for bug-fixing primarily.

[Kincekara]

@staphb-dockerbuilds-diff skani 0.3.1 0.3.2

[github-actions]

Dockerfile Diff: skani

Comparing: 0.3.1 -> 0.3.2

--- build-files/skani/0.3.1/Dockerfile	2026-06-18 18:57:46.268268214 +0000
+++ build-files/skani/0.3.2/Dockerfile	2026-06-18 18:57:46.268352868 +0000
@@ -1,4 +1,4 @@
-ARG SKANI_VER="0.3.1"
+ARG SKANI_VER="0.3.2"
 
 ## Builder ##
 FROM rust:1.90.0 AS builder
@@ -12,11 +12,11 @@
     chmod +x /root/.cargo/bin/skani
 
 ## App ##
-FROM ubuntu:jammy AS app
+FROM ubuntu:noble AS app
 
 ARG SKANI_VER
 
-LABEL base.image="ubuntu:jammy"
+LABEL base.image="ubuntu:noble"
 LABEL dockerfile.version="1"
 LABEL software="skani"
 LABEL software.version=${SKANI_VER}
@@ -25,6 +25,8 @@
 LABEL license="https://github.com/bluenote-1577/skani/blob/main/LICENSE"
 LABEL maintainer="Kutluhan Incekara"
 LABEL maintainer.email="kutluhan.incekara@ct.gov"
+LABEL maintainer2="Raheel Ahmed"
+LABEL maintainer2.email="raheelsyedahmed@gmail.com"
 
 # copy app from builder stage
 COPY --from=builder /root/.cargo/bin/skani /usr/local/bin/skani
@@ -40,8 +42,11 @@
 ## Test ##
 FROM app AS test
 
-RUN apt-get update && apt-get install -y wget &&\
-    wget https://github.com/bluenote-1577/skani/raw/v0.2.0/refs/e.coli-EC590.fasta &&\
+WORKDIR /test
+
+RUN apt-get update && apt-get install -y wget && \
+    apt-get autoclean && rm -rf /var/lib/apt/lists/* && \
+    wget https://github.com/bluenote-1577/skani/raw/v0.2.0/refs/e.coli-EC590.fasta && \
     wget https://github.com/bluenote-1577/skani/raw/v0.2.0/refs/e.coli-K12.fasta
 
 RUN skani dist e.coli-EC590.fasta e.coli-K12.fasta
\ No newline at end of file

[Kincekara]

test looks good

#14 [test 3/3] RUN skani dist e.coli-EC590.fasta e.coli-K12.fasta
#14 0.052 [00:00:00.000] (7f9471c21800) INFO   skani dist e.coli-EC590.fasta e.coli-K12.fasta
#14 0.095 [00:00:00.042] (7f9471c21800) INFO   Learned ANI mode detected. ANI may be adjusted according to a regression model trained on MAGs.
#14 0.095 [00:00:00.043] (7f9471c21800) INFO   Generating sketch time: 0.042976648
#14 0.105 [00:00:00.052] (7f9471c21800) INFO   ANI calculation time: 0.009690709
#14 0.105 Ref_file	Query_file	ANI	Align_fraction_ref	Align_fraction_query	Ref_name	Query_name
#14 0.105 e.coli-K12.fasta	e.coli-EC590.fasta	99.39	91.89	92.46	NC_007779.1 Escherichia coli str. K-12 substr. W3110, complete sequence	NZ_CP016182.2 Escherichia coli strain EC590 chromosome, complete genome
#14 DONE 0.1s

[Kincekara]

Thank you for the update!
You can check the deployment status here: https://github.com/StaPH-B/docker-builds/actions/runs/27782824965