Mlst 2.33.0

[RaheelSyedAhmed]

Pull Request (PR) checklist:

• Include a description of what is in this pull request in this message.
• The dockerfile successfully builds to a test target for the user creating the PR. (i.e. docker build --tag samtools:1.15test --target test docker-builds/build-files/samtools/1.15 )
• Directory structure as name of the tool in lower case with special characters removed with a subdirectory of the version number in build-files (i.e. docker-builds/build-files/spades/3.12.0/Dockerfile)
  • (optional) All test files are located in same directory as the Dockerfile (i.e. build-files/shigatyper/2.0.1/test.sh)
• Create a simple container-specific README.md in the same directory as the Dockerfile (i.e. docker-builds/build-files/spades/3.12.0/README.md)
  • If this README is longer than 30 lines, there is an explanation as to why more detail was needed
• Dockerfile includes the recommended LABELS
• Main README.md has been updated to include the tool and/or version of the dockerfile(s) in this PR
• Program_Licenses.md contains the tool(s) used in this PR and has been updated for any missing

This PR is centered around updating the dockerfile for MLST to version 2.33.0. It also includes the potential addition (if approved) of mlstdb, a helper tool to keep mlst databases updated with information from PubMLST and/or Pasteur.

README.md is slightly longer than 30 lines to supply the user with default schemes available for sequence typing.

[RaheelSyedAhmed]

This PR is still a draft, pending approval for usage of the mlstdb tool and for approval of test files including those used to produce the pstuartii scheme for testing.