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docs: add a Contributor Covenant code of conduct - #206
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Adds CODE_OF_CONDUCT.md (Contributor Covenant 2.1, verbatim canonical text) with the CITATION.cff maintainer emails as enforcement contacts, and links it from the README Getting help section, CONTRIBUTING Getting help, and the docs/index.md support paragraph. Co-authored-by: Gwenlyn Glusman <3977332+gglusman@users.noreply.github.com>
SkyeAv
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September 30, 2026 20:05
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Looks good. Thanks for adding this!
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Cut 19.5.1 and bump the package version in pyproject.toml, CITATION.cff, and uv.lock. Patch: docs-only surface refresh plus a behavior-preserving dependency bump. biolink-model 4.4.5 absorbs the dropped CLASS_FIELD_OVERRIDES grants upstream (the effective field set on the pinned EntityToDiseaseAssociation / EntityToPhenotypicFeatureAssociation classes is unchanged) and the Rust layer passes validation_ctx by value to satisfy Rust 1.99's needless_borrows_for_generic_args lint (#209). Documentation gains a statement of need and audience, a Getting help pathway, experimental labels on the agent/optimize/distill surfaces, runnable fullmap prerequisites in the tutorial, a three-method installation guide, and plain-ASCII prose (#205); CODE_OF_CONDUCT.md ships Contributor Covenant 2.1 with CITATION.cff maintainer emails as enforcement contacts (#206); CITATION.cff gains verified ORCIDs for all three authors and a factual abstract (#207). Changelog: - Versioned the release as 19.5.1 dated 2026-10-01; added Changed entries for #205, #206, #207, and #209 with PR links. Docs: none needed here; the release changelog section is the docs update. Testing: - make check -> exit 0: ruff check/format clean, pyright clean, pytest 1674 passed / 52 skipped in 29.33s, cargo test 156 passed / 0 failed (127 + 11 + 17 + 1 across 5 suites), cargo clippy -D warnings clean
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The repo had no code of conduct; external reviewers and first-time contributors expect one alongside
CONTRIBUTING.md. Adds the Contributor Covenant 2.1 verbatim with real enforcement contacts, linked from every community touchpoint.Code of conduct
CODE_OF_CONDUCT.md: canonical Contributor Covenant 2.1 text (fetched from contributor-covenant.org, not paraphrased).CITATION.cff(sgoetz@isbscience.org,gglusman@isbscience.org), consistent with the private-security-report path documented inCONTRIBUTING.md.Links
README.md: Getting help gains a participation-agreement line linkingCODE_OF_CONDUCT.md.CONTRIBUTING.md: Getting help gains a Conduct bullet pointing at the enforcement contacts.docs/index.md: the support paragraph links the Code of Conduct alongside CONTRIBUTING (published-site URLs, matching the page's existing link style).Testing
uv run pytest -q --no-cov tests/test_docs_source_of_truth.py tests/test_docs_examples.py tests/test_docs_cli_coverage.py tests/test_agent_docs.py->233 passeduv run mkdocs build --strict -q-> exit 0rg -o '[^\x00-\x7F]' CODE_OF_CONDUCT.md-> empty (ASCII-clean, matching the post-docs: overhaul documentation for external readers #205 docs convention)Co-authored-by: Gwenlyn Glusman 3977332+gglusman@users.noreply.github.com
cc @gglusman