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kiwi0401 wants to merge 27 commits intoautofyn/2026-04-09-ad650ffrom
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[AutoFyn] autofyn/2026-04-10-9e09cc#71
kiwi0401 wants to merge 27 commits intoautofyn/2026-04-09-ad650ffrom
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Branch: autofyn/2026-04-10-9e09cc · Run: 4d6f1307-33f0-400d-83d2-5a594fd4c415 · Generated by AutoFyn

AutoFyn Bot and others added 27 commits April 10, 2026 02:56
- Date spine: flip default from GLOBAL MAX DATE to fact/event table max. Agent now always uses the primary fact table's max date as spine endpoint and references the "← USE THIS" marker from get_date_boundaries.
- JOIN type: make LEFT JOIN the explicit default for all JOINs. INNER JOIN now requires both a task-level signal and a compare_join_types tool call to confirm.

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
When a model with current_date already has pre-computed data in the DB,
the agent is now told to query that table's max date and use it as the
replacement — instead of defaulting to the fact table max from
get_date_boundaries. This preserves the original date range for
calendar/spine models that were pre-materialized.

Also fixes inconsistent GLOBAL MAX DATE reference in the warning block.

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
dbt is pip-installed to ~/.local/bin but agent subprocesses don't
inherit user PATH. Without this, the agent wastes 3-5 turns searching
for dbt. This ensures dbt is found immediately.

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
When agents encounter a locked DuckDB, they sometimes export/reimport
to a new file, leaving _locked/_bak/_backup copies. The glob-based
selection was picking files in arbitrary order, potentially evaluating
the stale copy instead of the live one.

Add _find_result_db() helper that filters out backup files and prefers
the expected filename or largest file. Fixes netflix001 eval reading
the wrong DB.

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
- Rolling window/MoM/WoW models must output ONE date per entity, not
  all dates. Agent was building full time-series (airbnb001: 11135 vs 3).
- Do not cast ID columns to different types (social_media001: INT→VARCHAR).
- Read dbt_packages models before writing SQL to leverage pre-built columns.

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
Merged the optional d2 step into d, making both validate_model_output
and audit_model_sources mandatory after every dbt run. audit had 0%
adoption as an optional step. Shortened the verbose sub-bullets to
save prompt length.

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
Replace remaining bare glob patterns in _detect_precomputed_tables,
_get_table_row_counts, and connection registration with the
_find_result_db helper that filters backup files.

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
Include per-table row counts and a "(largest table)" marker in the
TABLE MAX DATES section. This helps the agent identify fact tables
by size, complementing the existing date-based markers.

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
Agent was filtering out rows with NULL title/name from UNION results,
but these rows have valid data in other columns. This caused netflix001
to produce 98 instead of 99 rows.

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
Agents were adding WHERE/HAVING filters based on table/column names
(e.g., role='ACTOR' because table is 'actor_rating') instead of only
filtering when the task description explicitly requires it.

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
Instead of holding a persistent write lock on the DuckDB file, the MCP
connector now opens a transient read-only connection per query. This
prevents lock conflicts when dbt needs write access between MCP queries.

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
Agent was interpreting descriptive phrases like 'based on the movies
they appeared in' as justification for INNER JOIN, dropping rows with
NULL ratings. Added explicit examples of what IS vs IS NOT exclusion
language to prevent this misinterpretation.

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
Agents using ROW_NUMBER() with insufficient ORDER BY columns
produce non-deterministic IDs that cause downstream JOIN failures.

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
Deterministic post-agent pass that rewrites INNER JOIN to LEFT JOIN in
all non-ephemeral model SQL files before the final dbt run. Skips
rewriting when the task instruction contains explicit exclusion language
(e.g., "only", "exclude", "who have"). Scans only models/ directory,
skips comments and ephemeral stubs.

Filter stripping function implemented but disabled (too many false
positives on legitimate staging filters).

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
After value-verify agent completes, check each eval-critical table for
duplicate rows on its YML-defined unique key column. If duplicates exist
(fan-out from JOINs), deduplicate using ROW_NUMBER(). Only fires when
COUNT(*) > COUNT(DISTINCT key) — tables with correct row counts are
never touched. Skips tasks with no unique test in YML.

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
Emphasize that EVERY YML column must appear in SELECT, and add hints
for deriving common column patterns (hour_*, day_of_*, *_months, etc.).
Missing columns cause eval failure even when row count is correct.

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
… patterns

When CHECK 2 finds missing columns, give the verify agent concrete steps:
search source tables, derive from timestamp patterns (hour_X, month_X),
handle _fivetran_synced. Block progression to CHECK 3 until columns match.

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
Generate SELECT templates with all required YML columns as aliases,
giving the agent a starting point that ensures all columns are included.
Templates appear as comments in the REQUIRED COLUMNS section for
models that need to be written from scratch.

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
- New _add_missing_columns() function adds YML-specified columns
  missing from eval-critical tables using three strategies:
  A) Derivation patterns (hour_X, day_of_X, etc.)
  B) Cross-table join with intelligent source selection
  C) NULL placeholder for _fivetran_synced/_fivetran_deleted
- Also checks common metadata columns (_fivetran_synced) even
  when not listed in YML, using source tables in main schema
- Source table selection prefers id→<table>_id primary key mapping
- Move dedup + column adder to always run (even with --skip-agent)
- Add RANK() vs DENSE_RANK() guidance to agent prompt

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
Gold data often preserves negative signs for charges/prices (accounting
convention). The previous guidance to use ABS() caused twilio001 to fail
on total_spend (-0.158 vs 0.158). Now instructs agent to keep source
signs unless task explicitly says otherwise.

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
The verify agent's CHECK 7 was too aggressive — filtering rows where
one column is NULL removes valid data. Restrict to only all-NULL rows
and add explicit warning against IS NOT NULL filters.

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
COALESCE(col, 0) is correct for COUNT/SUM aggregates from LEFT JOINs
(e.g., count_visitors=0 when no events exist) but wrong for non-aggregate
columns (names, dates, IDs). Previous guidance was too absolute — it
caused pendo001 to produce NULLs where gold expects 0.

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
…ines

current_date replacement should only apply to date spines and WHERE
clauses. For 'current_age' or 'days_since_X' calculations, the actual
current date is correct. This fixes f1003 where driver_current_age
was computed with the data max date instead of today.

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
The verify agent sometimes makes things worse by over-filtering,
removing correct COALESCEs, or over-deduplicating. Add explicit
rule to only fix issues with high confidence.

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
The previous guidance was too absolute — some summary models need ABS()
for positive totals (twilio__account_overview) while detail models keep
original signs (twilio__number_overview). Make it context-dependent.

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
…m investigation

Gateway MCP subpackage (signalpilot/gateway/gateway/dbt/):
- New dbt_project_map and dbt_project_validate MCP tools for yml-direct
  project discovery and dbt parse validation
- Modular subpackage (types, scanner, inventory, work_order, formatters,
  validator, cache) — every file under 500 lines
- 43-test suite at tests/test_dbt_project_map.py covers discovery, broken
  projects, topological sort, cycle detection, token budgets, and cache
- mcp_server.py exposes both tools as thin asyncio.to_thread wrappers
- store.py: Windows fcntl shim so the gateway imports cleanly on win32

Benchmark runner hardening (run_dbt_local.py + others):
- Prompt externalized to benchmark/prompts/dbt_local_system.md and
  dbt_local_user.md (string.Template with ${var} placeholders so dbt Jinja
  {{ ref('x') }} passes through unescaped)
- Project-file context dump removed from system prompt (~32k -> ~9k chars).
  Agent uses dbt_project_map + Read/Glob on demand instead.
- MCP config injects PYTHONPATH and merges os.environ. Claude Code CLI
  strips cwd from MCP stdio configs, so without PYTHONPATH the gateway
  subprocess fails to import and shows up as {signalpilot: failed} at init.
- System prompt passed as {type: file, path: ...} to dodge Windows
  CreateProcess 32k char argv limit (misleading CLINotFoundError).
- Default max_turns bumped to 200 across all runners; max_budget_usd removed
  entirely. Validation loops are legitimate work; turn caps are safety only.
- allowed_tools whitelist removed from every runner. It was shadowing the
  Skill tool and stranding MCP tools the prompt referenced.
- Premature max-turns break inside the message loop removed (SDK enforces
  it; the runner was stranding the agent mid-write).

Docs (benchmark/docs/):
- non-determinism-investigation.md: full deep-dive on synthea001 cascade
  (int__all_visits.sql non-deterministic ROW_NUMBER -> int__final_visit_ids
  collisions -> visit_occurrence row loss -> int__cost_procedure drops 1
  row -> cost 808 vs 809). Includes 15-version DuckDB sweep showing no
  combination reproduces the gold, confirmation that the non-determinism
  is inherited from OHDSI/ETL-Synthea upstream (line 113 of
  AllVisitTable.sql), and a corpus-wide scan finding 30/68 tasks with
  risky ROW_NUMBER patterns (only ~6-7 actually fail because of it).
- continuation-prompt.md: full onboarding doc for the next session
  including a 12-check pre-flight checklist that catches every silent
  infra failure we hit today (MCP connect, skills load, prompt length,
  tool exposure, config regressions).
- progress.md and runs.md updated to reflect the ND investigation
  findings and mark the 7 affected tasks with (ND) flags.

Reference material:
- benchmark/ref/Dockerfile.spider-eval: reproducible build env with
  duckdb 1.3.1 + dbt-core 1.9.8 + dbt-duckdb 1.9.4 (versions current on
  2025-06-26, the gold's last-update date) for the non-determinism
  investigation. The ref/ clones themselves (spider/, synthea-omop-etl/)
  are gitignored.

.gitignore:
- Adds benchmark/test-env/, _dbt_workdir/, _parse_test/, scratch/, and
  the ref/spider and ref/synthea-omop-etl clones.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
@kiwi0401 kiwi0401 closed this Apr 14, 2026
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