Repository navigation

dnascope-pangenome: KMC thread cap, NUMA alignment lanes, faster indel2cnv, vg haplotypes alongside bwa - #40

Closed

haodongchen wants to merge 4 commits into

Sentieon:mainfrom

haodongchen:claude/pangenome-large-hosts

Closed

dnascope-pangenome: KMC thread cap, NUMA alignment lanes, faster indel2cnv, vg haplotypes alongside bwa#40
haodongchen wants to merge 4 commits into
Sentieon:mainfrom
haodongchen:claude/pangenome-large-hosts

Commits on Oct 27, 2026
- Cap KMC at 128 threads
  claude
  committed
  b2b57c2
- Split pangenome alignment into one lane per NUMA node
  claude
  committed
  704711a
- Hand indel2cnv's variants to workers one at a time
  claude
  committed
  320f337
- Run vg haplotypes alongside bwa when both fit in memory
  claude
  committed
  bf2dfbc