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Build a figure describing how pieces fit together

Status: Open.

#121 In SACGF/cdot;

· davmlaw opened on Jun 25, 2026

Publish docs/ as a versioned MkDocs site at docs.cdotlib.org

documentationImprovements or additions to documentationImprovements or additions to documentation

Status: Open.

#117 In SACGF/cdot;

· davmlaw opened on Jun 19, 2026

Capture & surface RefSeq genome/transcript mismatches (warn/refuse in FastaSeqFetcher)

Status: Open.

#115 In SACGF/cdot;

· davmlaw opened on Jun 18, 2026

Ensembl patch-scaffold transcripts (HG..._PATCH) missing from data — some ClinVar variants don't resolve

Status: Open.

#113 In SACGF/cdot;

· davmlaw opened on Jun 16, 2026

SnakeMake support for Mouse

Status: Open.

#103 In SACGF/cdot;

· davmlaw opened on Jan 21, 2026

Refactor GTF/GFF code to split out RefSeq/Ensembl

Status: Open.

#101 In SACGF/cdot;

· davmlaw opened on Oct 8, 2025

Choice of transcript version has changed (NM_001017995.2 uses UTA 20241220)

Status: Open.

#95 In SACGF/cdot;

· lhomas opened on Jul 2, 2025

Investigate using GENCODE as a source of transcripts

Status: Open.

#90 In SACGF/cdot;

· davmlaw opened on Jan 14, 2025

Accessing transcript data for genes from bacterial artificial chromosomes (BACs)

Status: Open.

#89 In SACGF/cdot;

· jarbesfeld opened on Jan 9, 2025

Make a proper release

Status: Open.

#85 In SACGF/cdot;

· davmlaw opened on Aug 26, 2024

JSON breaking schema changes

Status: Open.

#78 In SACGF/cdot;

· davmlaw opened on Mar 12, 2024

CDS phase (offset for eg ribo slippage)

Status: Open.

#76 In SACGF/cdot;

· holtgrewe opened on Mar 8, 2024