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feat: add microscope focus stack app #2

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Merged
Pluze merged 2 commits into from
Jun 4, 2026
Merged

feat: add microscope focus stack app #2

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08518e9
feat: add microscope focus stack app
Pluze Jun 4, 2026
cc4cdf9
feat: allow manual focus image selection
Pluze Jun 4, 2026
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2 changes: 2 additions & 0 deletions .gitignore
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@@ -1,2 +1,4 @@
.DS_Store
matlab_test.log
matlab_test*.log
photos/
4 changes: 3 additions & 1 deletion README.md
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Expand Up @@ -22,7 +22,7 @@ Workflow-specific calculations, plot choices, summaries, and exports stay in the
| --- | --- |
| Electrochemistry | Gamry DTA review, chrono overlays, CIC, CSC, VT resistance, and EIS export workflows |
| DIC | Image registration, paired crop preparation, ROI masks, Ncorr strain overlays, and summary export |
| Image measurement | Interactive curve tracing and curvature/radius measurement from image data |
| Image measurement | Interactive curve tracing, curvature/radius measurement, and microscope focus stacking |
| Wearable biosignals | ECG preview, filtering, peak detection, segments, templates, and SNR-style measurements |
| Reusable foundation | MATLAB UI helpers plus DTA and biosignal facades for app-facing workflows |
| Validation | Focused MATLAB suites, architecture guardrails, synthetic fixtures, and GitHub Actions CI |
Expand All @@ -47,6 +47,7 @@ labkit_DICPostprocess_app

% Image measurement
labkit_CurvatureMeasurement_app
labkit_FocusStack_app

% Wearable biosignal
labkit_ECGPrint_app
Expand All @@ -66,6 +67,7 @@ Then use the app window to load files, inspect plots or results, and export outp
| `labkit_DICPreprocess_app` | active | Image registration, paired crop preparation, and ROI mask drawing | Reference/current images | Aligned images, crop PNGs, ROI mask |
| `labkit_DICPostprocess_app` | active | Ncorr strain overlay, ROI summary, and colorbar export | Ncorr MAT, reference image, mask | EXX/EYY overlays, summary CSV, colorbar/level table |
| `labkit_CurvatureMeasurement_app` | experimental | Editable image-curve circle fit for radius and curvature | Image | Overlay PNG and curvature CSV |
| `labkit_FocusStack_app` | experimental | Microscope focus-stack fusion into one all-in-focus image | Focus image folder or selected image files | Fused PNG, focus map PNG, summary CSV |
| `labkit_ECGPrint_app` | experimental | ECG waveform preview, ROI filtering, peak/segment SNR, and SNR-over-time display | MAT timetable or CSV/TSV table | Segment SNR CSV and waveform PNG |

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