Towards v0.3.2

.gitignore

@@ -1,6 +1,10 @@
 docs/build
 dist/
-Deep_ACSA/__pycache__
-Deep_ACSA/gui_helpers/__pycache__
-build/
+DeepACSA/__pycache__
+DeepACSA/gui_helpers/__pycache__
+build/doctrees
 .vscode/
+.sync*
+DeepACSA/dist/
+DeepACSA/build/
+DeepACSA/installer/

.pre-commit-config.yaml

@@ -1,17 +1,22 @@
 repos:
   - repo: https://github.com/pre-commit/pre-commit-hooks
-    rev: v4.0.1
+    rev: v4.5.0  # Use the latest stable version
     hooks:
-      - id: check-toml
-      - id: check-yaml
+      - id: trailing-whitespace
       - id: end-of-file-fixer
-      - id: mixed-line-ending
+      #- id: check-yaml
+      - id: check-json
+      - id: check-added-large-files
   - repo: https://github.com/psf/black
-    rev: 22.3.0
+    rev: 25.1.0  # Use latest stable Black version
     hooks:
       - id: black
-  - repo: https://github.com/PyCQA/isort
-    rev: 5.10.1
+  - repo: https://github.com/asottile/blacken-docs
+    rev: 1.19.1
+    hooks:
+      - id: blacken-docs
+  - repo: https://github.com/timothycrosley/isort
+    rev: 6.0.1
     hooks:
       - id: isort
-        args: ["--profile", "black"]
+

CHANGELOG.rst

@@ -1,4 +1,37 @@
 
+2026-03-22
+==========
+
+Removed
+-------
+
+- GUI advanced modules from main GUI file.
+- Loss function declaration in the main GUI file.
+
+Added
+-----
+
+- GUI advanced modules subdir.
+- Support for more models (swinunet, 3Dunet)
+- No Scaling analysis option,
+
+Changed
+-------
+
+- ALoading of models now based on names
+- GUI graphics and layout.
+- Create masks not has full customtkiner support.
+
+- Updated the documentation and inserted a documentation tree for modules.
+- Provisional version of documentation for functions following the numpy style guide in gui_helpers modules..
+
+- Updated News section for patellar tendon ACSA model including reliability comparison.
+
+Fixed
+-----
+
+- Truncated cone formula for volume calculation.
+
 2023-10-04
 ==========
 

DeepACSA/DeepACSA.iss

@@ -0,0 +1,20 @@
+[Setup]
+AppName=DeepACSA0.3.2
+AppVersion=0.3.2
+DefaultDirName={pf}\DeepACSA
+DefaultGroupName=DeepASA
+OutputDir=installer
+OutputBaseFilename=DeepACSA0.3.2_Installer
+Compression=lzma
+SolidCompression=yes
+SetupIconFile=gui_helpers\icon.ico
+
+[Files]
+Source: "dist\DeepACSA\*"; DestDir: "{app}"; Flags: ignoreversion recursesubdirs createallsubdirs
+
+[Icons]
+Name: "{group}\DeepACSA0.3.2"; Filename: "{app}\deep_acsa_gui.exe"
+Name: "{commondesktop}\DeepACSA0.3.2"; Filename: "{app}\deep_acsa_gui.exe"; Tasks: desktopicon
+
+[Tasks]
+Name: "desktopicon"; Description: "Create a &desktop icon"; GroupDescription: "Additional icons:"

DeepACSA/DeepACSA.spec

@@ -0,0 +1,46 @@
+# -*- mode: python ; coding: utf-8 -*-
+
+
+a = Analysis(
+    ['deep_acsa_gui.py'],
+    pathex=[],
+    binaries=[],
+    datas=[('gui_helpers/deep_acsa.jpg', 'gui_helpers/gui_files'), ('gui_helpers/gui_files/ui_color_theme.json', 'gui_helpers/gui_files'), ('gui_helpers/icon.ico', 'gui_helpers/gui_files'), ('gui_helpers/gui_files/gear.png', 'gui_helpers/gui_files'), ('gui_helpers/gui_files/Cite.png', 'gui_helpers/gui_files'), ('gui_helpers/gui_files/Info.png', 'gui_helpers/gui_files')],
+    hiddenimports=['customtkinter'],
+    hookspath=[],
+    hooksconfig={},
+    runtime_hooks=[],
+    excludes=[],
+    noarchive=False,
+    optimize=0,
+)
+pyz = PYZ(a.pure)
+
+exe = EXE(
+    pyz,
+    a.scripts,
+    [],
+    exclude_binaries=True,
+    name='deep_acsa_gui',
+    debug=False,
+    bootloader_ignore_signals=False,
+    strip=False,
+    upx=True,
+    console=True,
+    disable_windowed_traceback=False,
+    argv_emulation=False,
+    target_arch=None,
+    codesign_identity=None,
+    entitlements_file=None,
+    icon=['gui_helpers\\icon.ico'],
+    onefile=True,
+)
+coll = COLLECT(
+    exe,
+    a.binaries,
+    a.datas,
+    strip=False,
+    upx=True,
+    upx_exclude=[],
+    name='DeepACSA',
+)

DeepACSA/__init__.py

@@ -0,0 +1,9 @@
+"""Container for all our package modules."""
+
+__version__ = "0.4.0"
+
+_author__ = ["Paul Ritsche"]
+
+__all__ = ["deep_acsa_gui"]
+
+from DeepACSA.deep_acsa_gui import *

Deep_ACSA/__main__.py → DeepACSA/__main__.py

@@ -1,6 +1,6 @@
 """This modules contains code to allow usage of the GUI from the command line"""
 
-from Deep_ACSA.deep_acsa_gui import runMain
+from DeepACSA.deep_acsa_gui import runMain
 
 if __name__ == "__main__":
     runMain()