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Error in validObject(.Object) when reading 'representations.vcf' file

Status: Open.

#47 In PapenfussLab/StructuralVariantAnnotation;

· sanghoonleeeins opened on May 1, 2025

Unclear CT field

Status: Open.

#46 In PapenfussLab/StructuralVariantAnnotation;

· SergioManzano10 opened on Mar 12, 2025

ERROR in converting gGrange to vcf

Status: Open.

#45 In PapenfussLab/StructuralVariantAnnotation;

· 9421g opened on Nov 15, 2024

Preserving Info Fields with breakpointgr2bedpe()

Status: Open.

#41 In PapenfussLab/StructuralVariantAnnotation;

· blex-max opened on Feb 8, 2023

Use SVLEN not END

Status: Open.

#38 In PapenfussLab/StructuralVariantAnnotation;

· d-cameron opened on Dec 8, 2021

Use ALT field instead of SVTYPE for determining symbolic allele type

Status: Open.

#37 In PapenfussLab/StructuralVariantAnnotation;

· d-cameron opened on Dec 6, 2021

Add support for LongRanger UNK and IMPRECISE_DIR

Status: Open.

#36 In PapenfussLab/StructuralVariantAnnotation;

· d-cameron opened on Dec 6, 2021

Interpretation error for breakend records with SVTYPE!=BND

bug

Status: Open.

#35 In PapenfussLab/StructuralVariantAnnotation;

· d-cameron opened on Apr 28, 2021

How to use single breakend to increase detection sensitivity for insertions

help wanted

Status: Open.

#33 In PapenfussLab/StructuralVariantAnnotation;

· tgong1 opened on Feb 11, 2021

Merging SVs

enhancement

Status: Open.

#29 In PapenfussLab/StructuralVariantAnnotation;

· gdeoli opened on May 20, 2020

Error loading vcf with some SV types

Status: Open.

#26 In PapenfussLab/StructuralVariantAnnotation;

· cboursnell opened on Nov 21, 2019

<CNV> not supported

enhancement

Status: Open.

#25 In PapenfussLab/StructuralVariantAnnotation;

· d-cameron opened on Nov 8, 2019