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Installation fails with python 3.12

Status: Open.

#121 In PMCC-BioinformaticsCore/janis-core;

· ddeepwell opened on Jan 26, 2024

Some package dependencies are out of date

Status: Open.

#120 In PMCC-BioinformaticsCore/janis-core;

· ddeepwell opened on Jan 16, 2024

Failed translation of Galaxy tool with ID containing a macro

Status: Open.

#119 In PMCC-BioinformaticsCore/janis-core;

· ddeepwell opened on Jan 16, 2024

Failed translation of Galaxy tool with output collections containing data with same name

Status: Open.

#118 In PMCC-BioinformaticsCore/janis-core;

· ddeepwell opened on Jan 16, 2024

ModuleNotFoundError: No module named 'cwl_utils.parser_v1_2'

Status: Open.

#105 In PMCC-BioinformaticsCore/janis-core;

· ntachukwu opened on Nov 17, 2021

fromwdl: missing optional inputs should result in empty conversion of WDL expressions, not half-empty strings with "null" inside

Status: Open.

#97 In PMCC-BioinformaticsCore/janis-core;

· mr-c opened on Aug 30, 2021

CWL generation: invalid result with output_type=File(), selector=Stdout() → "outputEval: _stderr"

Status: Open.

#95 In PMCC-BioinformaticsCore/janis-core;

· mr-c opened on Aug 30, 2021

fromwdl: can't handle single character identifiers

Status: Open.

#92 In PMCC-BioinformaticsCore/janis-core;

· mr-c opened on Aug 30, 2021

convert to WDL: force co-localization of secondary_files

Status: Open.

#90 In PMCC-BioinformaticsCore/janis-core;

· mr-c opened on Aug 26, 2021

Translation for array of array of file

Status: Open.

#67 In PMCC-BioinformaticsCore/janis-core;

· junyk opened on Feb 16, 2021

Janis is not creating secondary output in WDL for array of outputs in tool

Status: Open.

#62 In PMCC-BioinformaticsCore/janis-core;

· illusional opened on Jan 29, 2021

Add "all-in-one" mechanism to janis translate

Status: Open.

#60 In PMCC-BioinformaticsCore/janis-core;

· illusional opened on Jan 27, 2021