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Add Week 9: Neuroinformatics (standards, sharing, credit)#13

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neuromechanist merged 2 commits into
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feature/week-09-neuroinformatics
Jun 3, 2026
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Add Week 9: Neuroinformatics (standards, sharing, credit)#13
neuromechanist merged 2 commits into
mainfrom
feature/week-09-neuroinformatics

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Summary

Week 9 of the Agentic Research Course: neuroinformatics data standards, sharing, and credit.

  • 23-slide deck (presentations/week-09/presentation.json); validates 0 errors / 0 warnings against the agentic-presentation-builder schema
  • 21 hand-authored hero figures in assets/icons/ (course palette), including the real HBN-EEG Figure 9 embedded with annotations on slide 10
  • Blog guide (blog/week-09-neuroinformatics.md), outline, and slide plan
  • Slide 21 shows the live DataCite NEMAR-vs-OpenNeuro metadata gap on the same dataset and authors (8/8 vs 0/8 ORCID; license, keywords, description, related links present vs blank)

Scope

Standards + sharing: BIDS (structure), HED (semantics) + the recreate-the-stimulus bar, HEDit, the neuroinformatics plugin (bids-conversion + bids-validator agent), OpenNeuro/NEMAR, nemar-cli DOI + ORCID auto-link. PsychoPy/LSL intentionally out of scope.

Testing

  • Deck schema-validated (0/0); all 20 image refs resolve
  • Every SVG rendered (rsvg-convert) and visually QA'd
  • nemar-cli commands verified against nemar-cli/docs; DataCite numbers pulled live from api.datacite.org

Note: the typos CI check has been red on main since week-05 (pre-existing false positives in earlier weeks); week-09 adds no new typos. YouTube embed uses a placeholder ID until the recording is posted.

23-slide deck (presentation.json validates 0 errors/0 warnings), 21 hero figures including the real HBN-EEG Figure 9 embedded with annotations, blog post, outline, and slide plan. Slide 21 shows the live DataCite NEMAR-vs-OpenNeuro metadata gap (8/8 vs 0/8 ORCID). Diagrams rendered and visually QA'd; deck schema-validated.

Scope: standards + sharing (BIDS, HED, HEDit, neuroinformatics plugin, OpenNeuro/NEMAR, nemar-cli DOI+ORCID).
Define HBN-EEG/DOI/ORCID/FAIR on first use in the blog and define HBN in the slide deck (common neuro abbreviations left as-is per review); fix 'token cached' -> 'API key cached' (nemar uses an API key); correct the mock report count to 'Errors fixed: 2'; sync slide-plan/outline to 23 slides. Deck re-validates 0/0.
@neuromechanist neuromechanist merged commit 48fda2d into main Jun 3, 2026
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@neuromechanist neuromechanist deleted the feature/week-09-neuroinformatics branch June 3, 2026 07:42
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