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Update HDMF dependency to >=5.0.0, <6#2172

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rly merged 2 commits intodevfrom
add-support-for-hdmf-5
Mar 8, 2026
Merged

Update HDMF dependency to >=5.0.0, <6#2172
rly merged 2 commits intodevfrom
add-support-for-hdmf-5

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@rly rly commented Mar 8, 2026

Summary

  • Updated HDMF dependency range from >=4.1.2,<5 to >=5.0.0,<6
  • Updated pinned versions in requirements.txt, requirements-min.txt, and environment-ros3.yml
  • Moved hdmf to pip section in environment-ros3.yml since 5.0.0 is not yet available on conda-forge

Resolves #2171

Test plan

  • All 732 unit + integration tests pass locally with HDMF 5.0.1.dev
  • CI passes

🤖 Generated with Claude Code

Resolves #2171

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
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codecov bot commented Mar 8, 2026

Codecov Report

✅ All modified and coverable lines are covered by tests.
✅ Project coverage is 95.11%. Comparing base (beb774d) to head (9ce91f3).
⚠️ Report is 1 commits behind head on dev.

Additional details and impacted files
@@            Coverage Diff             @@
##              dev    #2172      +/-   ##
==========================================
- Coverage   95.21%   95.11%   -0.11%     
==========================================
  Files          29       29              
  Lines        2945     2945              
  Branches      757      757              
==========================================
- Hits         2804     2801       -3     
- Misses         84       86       +2     
- Partials       57       58       +1     
Flag Coverage Δ
integration 72.86% <ø> (-0.07%) ⬇️
unit 85.05% <ø> (-0.11%) ⬇️

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HDMF 5 requires pandas>=1.4.0, so the pynwb minimum must be raised
to match.

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
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rly commented Mar 8, 2026

NWB inspector tests are failing due to an incompatibility being tracked on NeurodataWithoutBorders/nwbinspector#675

@rly rly marked this pull request as ready for review March 8, 2026 20:52
@rly rly requested review from bendichter and oruebel March 8, 2026 20:52
@rly rly enabled auto-merge (squash) March 8, 2026 20:56
@rly rly merged commit 16886ae into dev Mar 8, 2026
24 of 26 checks passed
@rly rly deleted the add-support-for-hdmf-5 branch March 8, 2026 22:36
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[Feature]: Support HDMF 5

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